Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2668 ATGTTAGATAACACAGTTAATTCCTCTTCTGATGCCACTACTGCTTTTGCATTATCAGAAAATGGGGGTGCTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAAGTTGTGTCTCTATCACCAAAGACTTTGTTAGAATCAGACAGATATGTTTGTGAGATCTGTAACCAAGGGTTTCAAAGAGACCAGAATCTTCAAATGCATAGAAGAAGACACAAAGTACCATGGAAATTGTTGAAAAGAGAAACAACACAAGGATTAAAAAAGAGAGTATTTGTTTGTCCAGAACCAAGTTGTTTGCATCATGATCCATGTCATGCACTAGGTGACCTTGTTGGAATCAAGAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGACAAATGCAACAAAGGTTATGCTGTTCAATCTGATTATAAAGCACATATCAAAACATGTGGTACCAGAGGACATTCGTGTGATTGTGGTCGTGTGTTTTCCAGGGTGGAGAGTTTTATAGAACATCAAGACGCATGCACAATCCGAGGGAAACACCAACCAGAGTTCCAAGCAACAACAATGCAGCCTGCATGTTCTTCTAGAACTGCTTCAAGCACAAGTCCATCTAGTGAGGCAAATTTTAGTATATCTGCCCCATTACAAGGATTACCAGTGCTTCCAAAACCACCTGATAAACCATTATCAGCACCTACCTTATTAACTAATTCAGATATACATAACAAGCCTTCCACTTCTCATCACCACCATAACTTAGAACTTCAACTCTTACCTTCCTCTATAAACCCTCAAGTGGAAAAATCAAATTCAAACGATCAAAGCTACGAAACACACTTGAAACTTTCGATAGGAAATAATGAGTCAGAGAAACAAAGGAATGATGTATCCACATTGGAACTAGCAAGGTTAAAAGAGTTTACTAGTGAGGAGCTAAAGTTGGCAATGGCAGAAAAGGCTTATGCAGAAGAAGCTAGAAAAGAAGCTAAACGTCAAATTGAGATAGCTGAAGTTGAGTTTGAGAATGCAAAAAGGATAAGGAAACAAGCACAAGATGAACTTGGAAAAGCTGAAGCTTTGAGAAAACAAGCTATTAAGAAGATAAGTAACACTGTTATGGAAGTAACATGCCAAGCTTGTAAGCAACAATTTCAATCTTCAACTTCTGGTGTTCCATCAGAAGAAACATCCATTGTTATGGGTTACATGTCCTCAGCCACCACAGAAGGGGAAGCAGAATGA 1266 0.3823 MLDNTVNSSSDATTAFALSENGGANNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGLKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTIRGKHQPEFQATTMQPACSSRTASSTSPSSEANFSISAPLQGLPVLPKPPDKPLSAPTLLTNSDIHNKPSTSHHHHNLELQLLPSSINPQVEKSNSNDQSYETHLKLSIGNNESEKQRNDVSTLELARLKEFTSEELKLAMAEKAYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAIKKISNTVMEVTCQACKQQFQSSTSGVPSEETSIVMGYMSSATTEGEAE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2668 421 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Mtr8g2668 421 Coils Coil 320 375 - -
Mtr8g2668 421 PANTHER OS03G0310200 PROTEIN 2 421 IPR039288 GO:0009630
Mtr8g2668 421 MobiDBLite consensus disorder prediction 1 43 - -
Mtr8g2668 421 SMART c2h2final6 56 78 IPR013087 -
Mtr8g2668 421 SMART c2h2final6 134 161 IPR013087 -
Mtr8g2668 421 SMART c2h2final6 98 128 IPR013087 -
Mtr8g2668 421 MobiDBLite consensus disorder prediction 393 421 - -
Mtr8g2668 421 MobiDBLite consensus disorder prediction 195 258 - -
Mtr8g2668 421 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Mtr8g2668 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Mtr8g2668 421 Gene3D Classic Zinc Finger 34 99 - -
Mtr8g2668 421 SUPERFAMILY beta-beta-alpha zinc fingers 55 154 IPR036236 -
Mtr8g2668 421 MobiDBLite consensus disorder prediction 393 412 - -
Mtr8g2668 421 MobiDBLite consensus disorder prediction 1 21 - -
Mtr8g2668 421 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 2 421 - -
Mtr8g2668 421 MobiDBLite consensus disorder prediction 195 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2668 Mtr-Chr8 37335253 37338559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2668 17 421 C2H2 Transcription Factor Family AT2G01940 56.738 2.71e-159 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr8g2668 zf-C2H2 0.0039 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2668 8 37335253 37338559 Mtr8g2668 8 37335253 37338559 ECH