Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2093 ATGGTGGCACCAAATCACAAAAACACACAAGATCATGAAAACCAACAAGGTTCTTCATCAGAAACCAAGATAACAGATCAACAAAAAGTTGTAATAAAATGTCCAAGATGTGATTCTCCAAACACAAAATTCTGTTACTACAACAACTACAGTCTCACTCAACCAAGACATTTCTGCAAAACATGCAGAAGATATTGGACAAATGGTGGATCGTTGCGTAACGTTCCGATTGGTGGTGGTTGTAGAAAGAAACAAAAACTCAAACACTCATCTACACCATCTCAAGCCATTAATAAGTACTCTACTTCACCTTCTCTTGATTTTCATCTTGGTTCTTTACCCTTACCTTTATCCTTACCTTTCTCTTCAAAACCATTTTACTATAACCAATTCTCTTCCATTGGTGGAGTTTCAAGTTCAAACACTTGTGTTTCTACTACAAGTGCTTCAAGTTTTCACCTTGATCCAAATGGTTTAAATTTATATCCTTTCTCTTCTTCAAATGGAGGTGGATTTATTAATGGTGGAAATGAAAATGCAGCAATTCAAGGAATGAACTTTATGAATGTGAGTACTAGTGCTAATAACACTAATTGCACTAGTCTTGCTTCTAGTATTGAATCATTGAGTTGTAGGAACCAAGATTTGCATTTGAAGCTTCAGCAGCAAAGATTAGCAACCTTGTTTGAAGATAATAACAGGAAAGAGAGTGGAACTGTTTTGCTTTCTCAGGTTAGCATTGAAAAGCCTCAACCTATTTTGTTTCAGAATCTTGAGATTTCAAAGGCTGAGATGTTTCAAGTTGGTGGTGGTGGTGATTCAAGAAAGGAAGGTGCAAGTGAATGGTTCTTTGGTATGAATTCTTATTCATCTGTGATGGCTCCTACAACAACTACTGATCTTAGTGTTTGCATTAATGGTGATCATGATCCAAATGGAAACAACAACTGGATTAATAATGGTGTTCATGCTTGGGGTGATGTGCAGCAGCAGCAACCATATACTGCTTTGCCCTAA 1017 0.3677 MVAPNHKNTQDHENQQGSSSETKITDQQKVVIKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKLKHSSTPSQAINKYSTSPSLDFHLGSLPLPLSLPFSSKPFYYNQFSSIGGVSSSNTCVSTTSASSFHLDPNGLNLYPFSSSNGGGFINGGNENAAIQGMNFMNVSTSANNTNCTSLASSIESLSCRNQDLHLKLQQQRLATLFEDNNRKESGTVLLSQVSIEKPQPILFQNLEISKAEMFQVGGGGDSRKEGASEWFFGMNSYSSVMAPTTTTDLSVCINGDHDPNGNNNWINNGVHAWGDVQQQQPYTALP* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2093 338 Pfam Dof domain, zinc finger 31 86 IPR003851 GO:0003677|GO:0006355
Mtr8g2093 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 337 IPR045174 GO:0003700|GO:0006355
Mtr8g2093 338 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Mtr8g2093 338 MobiDBLite consensus disorder prediction 1 25 - -
Mtr8g2093 338 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Mtr8g2093 338 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 16 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2093 Mtr-Chr8 30911958 30913612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2093 4 338 C2C2-Dof Transcription Factor Family AT5G65590 37.110 8.61e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr8g2093 zf-Dof 6.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2093 - - cam:101501747 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1299 5 13391639 13393251 Mtr8g2093 8 30911958 30913612 PCT