Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1599 ATGTCCTTGCTGTGTGGTTCACCATCAGTGACGTTCCCTTCATCTTCTTCATTCTCTCATCACAAGAATTCAACTTCTAAATCTTCCTTTCTTTCTTCTCAATTACCACTTTCAAACCTTTCATTATCATCTTCTTCAATTCGTTCTCCATCTTTCATTGTCCATTCTCAGCAGGAAACTTCCATTGTCGCAGAAGAAGAAGATCCTCGTTTCATCTGTGTTGAACCTGAGCCCCGCTTTCAAGGCCCGGACATTTGGAACACAACCTGGTATCCAAAAGCTTCGGATCATGTCAATACAGAGAAAACGTGGTATATTGTTGATGCTACAGATAAAATTCTTGGAAGACTAGCATCAACAATTGCTAATCACATCCGAGGGAAAAATTTAGTGACTTATACACCCAGTGTGGACATGGGTTCATTTGTAATTGTGATAAATGCAGAAAAGGTTGCTGTCAGTGGGAAAAAGAGGACCCAGAAGCTTTATCGGCGGCACTCAGGTCGACCTGGTGGTATGACAGTCGAGACATTTGACCAGCTGCAGAACAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCAGGACTCTATTCACACGTCTGAAGGTTTATAGCGGCCCAGATCATCCACATGAAGCGCAGCAGCCCATTGATTTGCCAATTAGGGATAAGAGAATACAGTTGCAGAGATAA 723 0.4288 MSLLCGSPSVTFPSSSSFSHHKNSTSKSSFLSSQLPLSNLSLSSSSIRSPSFIVHSQQETSIVAEEEDPRFICVEPEPRFQGPDIWNTTWYPKASDHVNTEKTWYIVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGSFVIVINAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQNRIPERIIEHAVRGMLPKGRLGRTLFTRLKVYSGPDHPHEAQQPIDLPIRDKRIQLQR* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1599 240 Hamap 50S ribosomal protein L13 [rplM]. 104 239 IPR005822 GO:0003735|GO:0005840|GO:0006412
Mtr8g1599 240 Gene3D Ribosomal protein L13 93 236 IPR036899 GO:0003735|GO:0005840|GO:0006412
Mtr8g1599 240 ProSitePatterns Ribosomal protein L13 signature. 194 216 IPR023563 GO:0003735|GO:0005840|GO:0006412
Mtr8g1599 240 MobiDBLite consensus disorder prediction 1 21 - -
Mtr8g1599 240 TIGRFAM rplM_bact: ribosomal protein uL13 98 229 IPR005823 GO:0003735|GO:0005840|GO:0006412
Mtr8g1599 240 PANTHER RIBOSOMAL PROTEIN L13 58 240 IPR005822 GO:0003735|GO:0005840|GO:0006412
Mtr8g1599 240 CDD Ribosomal_L13 104 217 IPR005822 GO:0003735|GO:0005840|GO:0006412
Mtr8g1599 240 PANTHER BNAA02G18970D PROTEIN 58 240 - -
Mtr8g1599 240 SUPERFAMILY Ribosomal protein L13 99 231 IPR036899 GO:0003735|GO:0005840|GO:0006412
Mtr8g1599 240 Pfam Ribosomal protein L13 102 220 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1599 106 239 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 30.370 1.55e-08 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1599 8 23135758 23140399 Mtr8g1599 8 23135758 23140399 ECH