Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1597 ATGAAAAGAAGAATTCCCTTCCTACTTCAACAACCTTCACCTTCAACAACCACATATCTTTCCTCCATTAACTTACTCCTTAAACCCCCAAATCACTACAATGCCACACCACCACCACCTTCTCATCGCACCTTCAAATCCCATTCCCTCCCACCCCCAGAACTCATCGAACCATTCTCCGACCTCTCCGACGTCGTCGTTTCCTCTAAACAACCTTCTCCATGGTTCACCCAAATCCTCAACCTCCTCGACAATTCCCCAACCATGGAATCAAATCTCGATTCCTTCTGCCACCAATTCCTCATCACTCTTTCCCCTTCCTTCGTCGCTCATACTCTCCGTTCCCTTAACAACCACCACACCGCCCTTCGTTTCTTCTCTTGGGCTTCTCATCAACGTAACTATTCCCATTCTCTCGATTGCTACGTTTCGATCATTAACCTTCTCCTCATCTCCCCCACCACCACCACCACGGCAGCCGCTTTAAACATTTTCTCCGAATTTCAACGTAACCGTCTCCCGCTTACACCACCTGCTGCTAATTCCCTCATTAAAAGCTTCGGTAACGCTGGTTTGGTTAACGAGCTTTTATTTGTATGGCGTGGAATGAATGAGCAAAACATTCAACCAAGTCTTTTTACTTATAATTCGCTTTTGAATGGACTTGTTGGTTCGTGTTTTATCGAATCAGCAGAGCGTGTTTTTGATGCGATGAAGGAAGGTAGAACAAAGCCTGATGTGGTTACTTACAATACTATGATCAAAGGGTATTGTAAAGCGGGGAAAACACGGAAGGCGATTGAGATGGTTCGCGAAATGGAGGTTATTAACTTGGAGCCTGATGTTGTTAGTTATATGACAGTAATGCAGGCTTGTTATGCTGAAGGTGATGTTGATTTTTGTTTGAGTCTTTATCATGAAATGGAGGATAAGGGATTTGAAGTTCCTTCACATGGTTATAGTTTGGTGATATGCGGGCTTTGTAAAATGGGAAAGGTTTTAGAAGGGTATGCTTTGTTTGAGAATATGATTAGAAATGGTTGTAAGGGTAATAAGGCTGTTTATACTGCTTTGATTGATTGTTATGGGAAGAGTGGGAATTCGGATGGGGCTTTGAGGTTGTTTGAGAGGATGAAAATGGATGGGATTGAACCTGATGAGGTTACTTATAGTGCTATTGTTAATGGGTTGTGTAAGAGTGGGAGAGTGGAGGAAGCTTTGAGTTATTTTCAGTTTTGTAATGAGAATGGTGTTGTTGTTAATGCTGTGTTTTATTCGAGTTTGATTGATGGGCTTGGGAAGGCGGGGAGAGTTGATGAAGCCGAGAAGGTGTTTGATGAAATGGCTGAGAAGGGATGTCCGCCGGATTCGTATTGCTACAATGCGCTCATTGATGGACTTTGTAAGTGTGGGAGGATAGATGATGCTCTTGCGTTGGTAAAGAGGATGGAGCGCGATGGGTGTGAGCAGACTGTGTATACGTTTACTATACTTATCAGTGAGCTTTTTAGGGTGCATAGGAATGAAGAGGCGGTCAAGATGTGGGATTTGATGATTGACAAAGGGATAACGCCGAATGTTGCCTGTTTCAGGGCTCTTTCGATTGGATTGTGTCTTTCGGGGAAGGTTGCGAGGGCTTGCAAAGTGTTGGATGAGCTTGCACCTATGGGGGTTGTTCTTGAAACGGCTTATGAAGATATGATTGGAGCGCTGTGTAAAGCTGGTCGCGTGAAGGAGGCTTGTAAGTTGGCTGATGGAATTGTTGATAGAGGTAGAGAAATACCTGGGAAGATTAGGACCGTGATGATTCATTCCTTGAGGAAAGCTGGGAATGCTGATTTGGCTATCAAGTTGATGCATAGCAAGATTGGTATTGGGTATGAACGATATCGGAGTGTTAAAATGAGGGTCAAGTTTCAAACCCTTGTTGACAGTTGA 1938 0.4381 MKRRIPFLLQQPSPSTTTYLSSINLLLKPPNHYNATPPPPSHRTFKSHSLPPPELIEPFSDLSDVVVSSKQPSPWFTQILNLLDNSPTMESNLDSFCHQFLITLSPSFVAHTLRSLNNHHTALRFFSWASHQRNYSHSLDCYVSIINLLLISPTTTTTAAALNIFSEFQRNRLPLTPPAANSLIKSFGNAGLVNELLFVWRGMNEQNIQPSLFTYNSLLNGLVGSCFIESAERVFDAMKEGRTKPDVVTYNTMIKGYCKAGKTRKAIEMVREMEVINLEPDVVSYMTVMQACYAEGDVDFCLSLYHEMEDKGFEVPSHGYSLVICGLCKMGKVLEGYALFENMIRNGCKGNKAVYTALIDCYGKSGNSDGALRLFERMKMDGIEPDEVTYSAIVNGLCKSGRVEEALSYFQFCNENGVVVNAVFYSSLIDGLGKAGRVDEAEKVFDEMAEKGCPPDSYCYNALIDGLCKCGRIDDALALVKRMERDGCEQTVYTFTILISELFRVHRNEEAVKMWDLMIDKGITPNVACFRALSIGLCLSGKVARACKVLDELAPMGVVLETAYEDMIGALCKAGRVKEACKLADGIVDRGREIPGKIRTVMIHSLRKAGNADLAIKLMHSKIGIGYERYRSVKMRVKFQTLVDS* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1597 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Mtr8g1597 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Mtr8g1597 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Mtr8g1597 645 Pfam Pentatricopeptide repeat domain 479 533 IPR002885 -
Mtr8g1597 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Mtr8g1597 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Mtr8g1597 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Mtr8g1597 645 Pfam PPR repeat 244 274 IPR002885 -
Mtr8g1597 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Mtr8g1597 645 Pfam PPR repeat 567 588 IPR002885 -
Mtr8g1597 645 Pfam PPR repeat 213 240 IPR002885 -
Mtr8g1597 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Mtr8g1597 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Mtr8g1597 645 TIGRFAM PPR: pentatricopeptide repeat domain 388 411 IPR002885 -
Mtr8g1597 645 TIGRFAM PPR: pentatricopeptide repeat domain 458 489 IPR002885 -
Mtr8g1597 645 TIGRFAM PPR: pentatricopeptide repeat domain 213 247 IPR002885 -
Mtr8g1597 645 TIGRFAM PPR: pentatricopeptide repeat domain 425 457 IPR002885 -
Mtr8g1597 645 TIGRFAM PPR: pentatricopeptide repeat domain 354 387 IPR002885 -
Mtr8g1597 645 TIGRFAM PPR: pentatricopeptide repeat domain 493 527 IPR002885 -
Mtr8g1597 645 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Mtr8g1597 645 TIGRFAM PPR: pentatricopeptide repeat domain 283 314 IPR002885 -
Mtr8g1597 645 TIGRFAM PPR: pentatricopeptide repeat domain 320 351 IPR002885 -
Mtr8g1597 645 Gene3D Tetratricopeptide repeat domain 412 483 IPR011990 GO:0005515
Mtr8g1597 645 Gene3D Tetratricopeptide repeat domain 561 622 IPR011990 GO:0005515
Mtr8g1597 645 Gene3D Tetratricopeptide repeat domain 484 558 IPR011990 GO:0005515
Mtr8g1597 645 Gene3D Tetratricopeptide repeat domain 344 411 IPR011990 GO:0005515
Mtr8g1597 645 Gene3D Tetratricopeptide repeat domain 275 343 IPR011990 GO:0005515
Mtr8g1597 645 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 34 645 - -
Mtr8g1597 645 Pfam PPR repeat family 280 329 IPR002885 -
Mtr8g1597 645 Pfam PPR repeat family 353 399 IPR002885 -
Mtr8g1597 645 Pfam PPR repeat family 421 469 IPR002885 -
Mtr8g1597 645 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 34 645 - -
Mtr8g1597 645 SUPERFAMILY HCP-like 286 485 - -
Mtr8g1597 645 Gene3D Tetratricopeptide repeat domain 111 274 IPR011990 GO:0005515
Mtr8g1597 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1597 Mtr-Chr8 23117441 23121210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1597 118 628 Glycosyltransferase AT1G05670 26.121 1.20e-41 159