Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1530 ATGATGATGATGAACACGACCGACACAAATTTTACAAACATGTACAACAACTACAGCTACTCATCACTGTTACCACTTTCCGGCACAACCACCGTGTCGGAAAATCTCATTCCGTCGCAATCTCCGTCGAACAACCCTTTCATAACCGATTACATCCGTCAAAAAATAACCACCGTGAAACCAGACACAATCTTCGCTTACAACAACAACGTTGTATCGTTCCCACAAAAACGTTCTAGAGATTCTATTAATAACAATAACTACCCTTTCATCAGTGAAGATTTCTCTCAATACATCCACCATCAAAACACCGACATCGACAACTTCATTTCTCAACACACGGAGAAGTTTAGAGTGGAATTAGAAGAGAAAAGAAAGAGAGAAACAATGATGATAATGGAAGCAATAGAAAACGAAGTGATGAAGAAAATGAAAGCAAAAGAAGAAGAAATCCAAAAGATTGAAAGAATGAACATGATTCTTGAAGAAAAAGTGAAAACACTATGCATGGAGAATCAAATCTGGAGAGAGTTAGCACAAAACAATGAAGCAACCGCAAATGCCCTCAGAAACAATCTCCAACAAATACTCATGCAACAAATGGAAAACAACAACAACGGCGGTGAATACAGCGATGGCGGAGATTTTGCCGGTGCCGCCGCGGCGGGGGAGGATGCTGAGTCATGTTGCAGTAATGATGAATATTCCGGGTGGCGTAAGGTAGCAATGACGGTGCAGGATAAGGATGAAGGTACTAGTAATGGTAGAGTGATGAATAATAGATTATGCAGAAATTGTGGGGAAGGTGAATCTAGTGTTTTGATCATGCCTTGTAGACATTTATGTTTGTGTTCAATGTGTGGAGCTATGGTTCTTACTTGTCCTATTTGTGATTCTGTTAAATCTGCTACTCTTAATGTTAATCTTGATTAG 933 0.3966 MMMMNTTDTNFTNMYNNYSYSSLLPLSGTTTVSENLIPSQSPSNNPFITDYIRQKITTVKPDTIFAYNNNVVSFPQKRSRDSINNNNYPFISEDFSQYIHHQNTDIDNFISQHTEKFRVELEEKRKRETMMIMEAIENEVMKKMKAKEEEIQKIERMNMILEEKVKTLCMENQIWRELAQNNEATANALRNNLQQILMQQMENNNNGGEYSDGGDFAGAAAAGEDAESCCSNDEYSGWRKVAMTVQDKDEGTSNGRVMNNRLCRNCGEGESSVLIMPCRHLCLCSMCGAMVLTCPICDSVKSATLNVNLD* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1530 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 308 IPR013083 -
Mtr8g1530 310 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 12 309 - -
Mtr8g1530 310 Coils Coil 133 171 - -
Mtr8g1530 310 Pfam Zinc finger, C3HC4 type (RING finger) 260 299 - -
Mtr8g1530 310 ProSiteProfiles Zinc finger RING-type profile. 263 298 IPR001841 -
Mtr8g1530 310 Coils Coil 179 199 - -
Mtr8g1530 310 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 12 309 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1530 Mtr-Chr8 20406892 20408607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1530 259 297 Miscellaneous Gene Families AT4G39050 41.026 1.80e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1530 8 20406892 20408607 Mtr8g1530 8 20406892 20408607 ECH