Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1523 ATGGCAACAAAACTAGTACCCAGTTTAGTTCATCCTTTGAAATCAAGGTTTTTCGGTAATACTCTTTTAACCAAACAATCTTCTTTTCACCTTTATGGGGTTCAACCAAAGCTTTCATATTCTTCTTCTTCTAAGATAAGCATGAGTCTCAAAGCTGGTATTGTTGGTCTTCCTAATGTTGGCAAATCTACTCTCTTCAATGCCGTTGTTGAAAACGGAAAGGCTCAAGCTGCCAATTTTCCTTTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCCGTTCCAGATTCTCGTCTCCAAGTGCTATCCGATCTCAGTAAATCTCAACGAATGGTTCCAGCATCCATAGAGTTTGTAGATATTGCTGGCCTTGTAAAGGGTGCAAGTCAAGGCGAGGGTCTCGGCAATAAGTTTTTATCACATATTCGTGAGGTGGACTCCATACTTCAGGTTGTACGATGTTTTGATGATAATGACATTATTCATGTGAACGGGAAAGTTGATCCCAAGTCTGATATTGACGTTATCAACTTGGAGCTTGTTTTCACAGACTTAGACCAGATTGAGAAAAGACTGGACAAACTAAAAAAGGGCAAGACAAAGGATTCACAATCTAAAGTCAAGGAAGAGGCAGAAAAGACTGCATTGGAAAAAATTCGTGTAGCACTCTTGGATGGAAAACCTGCACGATCTGTGACCTTAACAGATTTTGAGAGGGAATCTGTAAAGCAACTTTGCTTGCTCACCATGAAACCCATTATATATGTGGCAAATGTTGCGGAGTCCGATCTAGCTGATGCAACAAACAATGATTACGTTACAGGTGTCAAGAATGTTGCATCTGAGTTGCAGTCTGGAATTGTAACAATTTCAGCGCAGGTTGAGGCAGAGCTTTCTGAACTAGCGCTTGAGGAAAGACAAGAATATTTGAAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGGAATCTAATTAGAGCAACATATGATCTTTTGGGGCTGCGAACTTATTTTACTTCCGGTGAGAAGGAGACAAAGGCATGGACAATACTTGCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATTCATTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACGGTGGCTTATGACGACTTTGTTGCTGCTGGTTCACTTGGTGCAGCACGAGAAAAAGGACTCTTGCGGTCTGAAGGTAAAGACTACATTGTACGAGAAGGAGATGTAATGTTGTTTCGATTCAATGTATAA 1254 0.4099 MATKLVPSLVHPLKSRFFGNTLLTKQSSFHLYGVQPKLSYSSSSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSDLSKSQRMVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIIHVNGKVDPKSDIDVINLELVFTDLDQIEKRLDKLKKGKTKDSQSKVKEEAEKTALEKIRVALLDGKPARSVTLTDFERESVKQLCLLTMKPIIYVANVAESDLADATNNDYVTGVKNVASELQSGIVTISAQVEAELSELALEERQEYLKSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLGAAREKGLLRSEGKDYIVREGDVMLFRFNV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1523 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 355 IPR027417 -
Mtr8g1523 417 CDD TGS_YchF_OLA1 331 415 IPR013029 -
Mtr8g1523 417 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 50 332 IPR031167 GO:0005525
Mtr8g1523 417 PANTHER OBG-LIKE ATPASE 1 48 417 - -
Mtr8g1523 417 Hamap Ribosome-binding ATPase YchF [ychF]. 49 417 IPR004396 GO:0005524|GO:0005525|GO:0016887
Mtr8g1523 417 CDD YchF 52 331 IPR041706 -
Mtr8g1523 417 SUPERFAMILY TGS-like 333 414 IPR012676 -
Mtr8g1523 417 TIGRFAM TIGR00092: GTP-binding protein YchF 48 417 IPR004396 GO:0005524|GO:0005525|GO:0016887
Mtr8g1523 417 Pfam Protein of unknown function (DUF933) 333 416 IPR013029 -
Mtr8g1523 417 Gene3D - 161 251 IPR023192 -
Mtr8g1523 417 PANTHER OBG GTPASE FAMILY 48 417 - -
Mtr8g1523 417 Gene3D - 50 332 IPR027417 -
Mtr8g1523 417 PIRSF EngD 47 417 IPR004396 GO:0005524|GO:0005525|GO:0016887
Mtr8g1523 417 Gene3D - 96 416 IPR012675 -
Mtr8g1523 417 Pfam 50S ribosome-binding GTPase 52 161 IPR006073 GO:0005525
Mtr8g1523 417 PRINTS GTP1/OBG GTP-binding protein family signature 52 72 IPR006073 GO:0005525
Mtr8g1523 417 PRINTS GTP1/OBG GTP-binding protein family signature 74 92 IPR006073 GO:0005525
Mtr8g1523 417 PRINTS GTP1/OBG GTP-binding protein family signature 118 133 IPR006073 GO:0005525
Mtr8g1523 417 PRINTS GTP1/OBG GTP-binding protein family signature 135 153 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1523 Mtr-Chr8 20282418 20289537 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1523 8 20282418 20289537 Mtr8g1523 8 20282418 20289537 ECH