Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1493 ATGTCAGTACTGATGGTAACGAGTTTAGGCGACATGGTTATAGATTTACACACCCAAAAATGTCCCTTAACCTGCAAAAACTTCTTGAAGCTTTGCAAGATTAAATATTACAATGGGTGTTTATTTCATACTGTTCAAAAAGATTTCACTGCTCAGACTGGTGATCCTACTGGAACTGCCACTGCTGGTGATTCTATCTACAAGTTTCTTTATGGGGATCAAGCTCGATTTTTCAATGATGAGATTCATATTGATCTAAAGCATTCTAAGACTGGAACTGTTGCCATGGCTAGTGCAGGAGAGAATCTGAATGCTTCACAGTTCTATATAACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACTGTTTTTGGCGAGGTCGCTGAAGGATTTGAGACTTTGACTAGAATTAATGAGGCTTATGCAGATGGAAAGGGAAGACCATTTAAAAATATCCGAATCAAGCACACTTACATCCTGGAAGATCCTTTTGATGATCCTCCTCAACTATCTGAGTTCATCCCTGATGCTTCACCAGAAGGAAAACCTAAAGACGAGGTTGATGATGAAGTCCGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCAGGAGAACTTGAAGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTATTGGGGATATTCCTGATGCTGAGGTTAAACCTCCAGATAATGTACTTTTTGTCTGTAAATTGAATCCGGTTACTGAGGATGAGGACTTGCACACAATATTTTCACGCTTTGGAACTGTCTCATCGGCTGAAATCATCCGTGATCACAAGACCGGCGACAGTTTATGCTATGCTTTTATAGAGTTTGAAGACAAACTGGCATGTGAGCAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTTTCAAAACTGTGGTCACAATACATGCGGAAAGATAATAAGGGTGGTGGTTGCTTCAAATGTGGTTCCACAGATCATATTGCTAAGGATTGCACTGGAGATGCTACAATGAAACAACCCACAAAATTTATCATGAAGGACAATAATGCCCAACGGGGTGGAGATAAAGCAAGATACGAAATGGTTTTTGATGGAGATAACACGGAAAGTCCAAAGAGAGAAATGAAACACCAGCGACATGAAAGGGATGACCGAAATGATAAAAAAGGCAGGAAGGAGAATTTTAAAGATGATAGTCATAGAGGTCGTAGGGATCAGGAGATGGCAGGCTCGAATAACAGAGATAGGCATCGCGATAGAAGCAGAGGGCTTGAAGGAAATGGAGATGATAAAGCGCGACTAGAAAGAGGTGCAAGAGATCCGGATTTTCATGCCGACAAGAAAGACATAGAAAGGCATATGGGAAGAAGACATGGAGATGATGATTACCGACGGAAAGATGAGCTAGACTCGAGAAAAAGAGACTTAGATGATAGATACACAGAAAGACGGGCTAGTCGAGATGATAGGAGAAAAACAGACGACAGCCATTTAGATAGGAGGGATGACAGAGATTATAGGAAGAGAACTGAAGATAGTGGAAGGCAAGATGTGAAGGTTGATTCTGGAAGAAGAAAACGAAGCCCAGATGGTGATGATTACAAACGTAGAAGGAATGATGAGGATTACAGACAAGATGTGAAGATTGATTCCGGACGAAGAAAACGAAGCCCGGATGATGGGGATTACAAACGTGGAAGGGACCATGAGGATTACAGACAGAGGAGGGAAGGTCGTGAACATAGAAGGACATGA 1818 0.4142 MSVLMVTSLGDMVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTATAGDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYADGKGRPFKNIRIKHTYILEDPFDDPPQLSEFIPDASPEGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLACEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYMRKDNKGGGCFKCGSTDHIAKDCTGDATMKQPTKFIMKDNNAQRGGDKARYEMVFDGDNTESPKREMKHQRHERDDRNDKKGRKENFKDDSHRGRRDQEMAGSNNRDRHRDRSRGLEGNGDDKARLERGARDPDFHADKKDIERHMGRRHGDDDYRRKDELDSRKRDLDDRYTERRASRDDRRKTDDSHLDRRDDRDYRKRTEDSGRQDVKVDSGRRKRSPDGDDYKRRRNDEDYRQDVKIDSGRRKRSPDDGDYKRGRDHEDYRQRREGREHRRT* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1493 605 ProSiteProfiles Zinc finger CCHC-type profile. 339 352 IPR001878 GO:0003676|GO:0008270
Mtr8g1493 605 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 517 IPR035542 -
Mtr8g1493 605 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 159 IPR002130 GO:0000413|GO:0003755
Mtr8g1493 605 CDD cyclophilin_RRM 4 169 IPR035538 -
Mtr8g1493 605 Pfam Zinc knuckle 338 353 IPR001878 GO:0003676|GO:0008270
Mtr8g1493 605 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Mtr8g1493 605 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Mtr8g1493 605 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Mtr8g1493 605 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Mtr8g1493 605 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Mtr8g1493 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Mtr8g1493 605 SUPERFAMILY RNA-binding domain, RBD 229 332 IPR035979 GO:0003676
Mtr8g1493 605 Gene3D - 1 172 IPR029000 -
Mtr8g1493 605 MobiDBLite consensus disorder prediction 384 605 - -
Mtr8g1493 605 CDD RRM_PPIL4 240 322 - -
Mtr8g1493 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Mtr8g1493 605 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Mtr8g1493 605 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Mtr8g1493 605 Gene3D - 182 325 IPR012677 -
Mtr8g1493 605 SMART rrm1_1 244 317 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1493 Mtr-Chr8 19603457 19610820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1493 7 166 U-box Gene Family AT5G67530 38.750 1.13e-28 119