Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1450 ATGGAAAGAATGTTCTCTCCAAAGAAGCCCTCAACTATGATGAATTCTCATGATAGACCCATGTCATGTGTTCAAGGTGACTCTGGCCTTGTCCTCACCACTGATCCAAAACCTCGGCTTCGATGGACCGTCGAACTCCATGAACGCTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGATAAAGCAACTCCAAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACCCTTTACCACCTTAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAAGAATTCAATGAGCAATCTATTAAGGATGTTTCTGCTTTTGAACTGCAAAGAAATACTGGTACCTCGTCTTCTATGACTGGTCGTAACATGAATGAGATGCAAATGGAGGTACACAGAAGACTGCATGAACAGCTAGAGGTTCAAAAGCACCTTCAATTGAGGATTGAGGCTCAAGGAAAATACATGCAAAGTATATTGGAGAAAGCTTATAACACACTTGCAGGTGAAAACATGGCAGCTGCAGCTACAAATTTCAAGGGCATCAATGGAACTCAAAGCATCCCCGACATGAAAGATTTTGTTTCTCCTCTTAACAATTTTCCTCATTTTCAAGATCTTAACATTTGTGGTAGTGATGATGAACAACTTGATCTTCATCACAACATAGAGAGGCCAACCCTTGATAGAATTATAATACCTAATAATAACAATAATAATGAAAATTTGTTTGTTGGAAAAAAAAGGACTAACCCTTTTAATGGAAGTGGAAAGAGTCCAATAATATGGAATGATAATGATCTTAGGCTTCATGATTTGGGAACAACTTCATCATCATGCATTAGTCCTGAAGATGTTCCTAATTTCAAAGGTGACTCATGTGATGAAAGTGATCCTATTGTTGATATTTATGACACAAAAGTGAGTGAGAAGAAATTTGATGCATCTATGAAGCTTGGAATAACATTACCTATGATCAATGCTGTTGCAGCTGGTAGAAGCTCATCACCATTTGGTTGA 1029 0.3887 MERMFSPKKPSTMMNSHDRPMSCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDVSAFELQRNTGTSSSMTGRNMNEMQMEVHRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYNTLAGENMAAAATNFKGINGTQSIPDMKDFVSPLNNFPHFQDLNICGSDDEQLDLHHNIERPTLDRIIIPNNNNNNENLFVGKKRTNPFNGSGKSPIIWNDNDLRLHDLGTTSSSCISPEDVPNFKGDSCDESDPIVDIYDTKVSEKKFDASMKLGITLPMINAVAAGRSSSPFG* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1450 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 288 - -
Mtr8g1450 342 Gene3D - 36 94 - -
Mtr8g1450 342 Pfam Myb-like DNA-binding domain 40 88 IPR001005 -
Mtr8g1450 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 94 IPR017930 -
Mtr8g1450 342 MobiDBLite consensus disorder prediction 1 22 - -
Mtr8g1450 342 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
Mtr8g1450 342 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 37 92 IPR006447 GO:0003677
Mtr8g1450 342 Pfam MYB-CC type transfactor, LHEQLE motif 130 168 IPR025756 -
Mtr8g1450 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 288 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1450 Mtr-Chr8 18084690 18087938 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr8g1450 Myb_DNA-binding 4.6e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1450 8 18084690 18087938 Mtr8g1450 8 18084690 18087938 ECH
Mtr2g2193 2 32917609 32920153 Mtr8g1450 8 18084690 18087938 PCT