Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1445 ATGCTTCTAATGGTGGTAGTCATGGATCAAGATTGCTCCCTCAAGTTCTTATTGGTAATGATAATACTCTTCCTAGGGTTTATTGCTTGGCTAGAAAACAAAGTAGCAAACTCAAATGAAGCCAATAAACAAAGGGATGAGGAGGTGGAAGTTAGTGATGAAATATTATTGTTTGAACAAGAGGATGAAGAGAACAAACTAAATGAATATTGTGTTTGCTCCTTTTGTGGCAAATTCAGAAACATAATCAAAAGATGCTCACGATGCAAAAATGCTATATATTGCTCAAAAGCATGCCATATCATGCATTGGAGATTTTGGCACAAAGATGAATGTGTTGAGATAGTGTCTGCAGAAGAACATGAGGAATCATCTTTTCATGGAACCCAGTGCTTTCTCTTGGAGCATGGAAACGAAAACTCTAAATACTCATTCAATGATGATGATGATGAGCATAAACCATATGAGGGGGATGTTTACTATATTGAGTCAATTAAAGAAACAGCAATAGGGCTTCAACATGGTGGCTGTGCAGTTTGTGGCAATCCATGTTCCCAAAAATGCTCAAGATGCAAAGCTATAAAATATTGCTCACAAGCATGCCAACATTTTGATTGGAAATTAGGGCATAAATTACAATGCTGTGTTAAGAAGACAAGTTCAACTCAAGTAACAACAAGCAATCAAGAATGGCCTACAGATGAAAATGTTATAATGCCTCCAAATCCAGATGAGGTGGTAGATAATGATCATTCATATGACCCTCTTTGCTTGGAATTTTATTCAGAAGAAAACACCAACAACAAGGCTCTGATTTTAATTTCTCAGGAAGCTAACAACAAAGTCCAAGAGGTTGAGGAAAAAATGAGAAACCTAAAAGATGAATTGGAAATGATCAGAAGTGAAAATATGACACTGCAATCAAAGCTTAACTATTGGGAAATTAGGGCAAAGTATTCTTCTGATAGACTTTACAGCTTCAAGAAAGAAAATGAACACCAGTTGATTATTTTGAAGCATGAAAATGAATTGATATCGAATGCTGAGAAACAAGCTCGTCAAATGGTTACGAATTTATCTCAAAGGCTTCATTGTTTGCAGATTGCAATGGAAACTGGAGTAGCAGAGAGGAAAAAACAAGAAGAGTTTATACATATGCTGCAGAATGAATGTGCCAAGACTAAGAGAGAGTTTCACGAACAAAACAAGTATGTTGAAAGGCTTAGACAGAAGCTTGATAATGTACCTCAATTTCCTATAAGAATGGCCGAAGAGACGAAACAAAAATTAACCATTCCTTCTAAGGCAATTTTGGCTGATGAATCCAAGGCTGCTGTTGTTGAGGTGTACAAGACAATCAGTTTAAGCAGAAATCCAACCTTGACTAGTCAGTCTTGTACAATTTGCTTAAGCAATGAGAAGGACTTGGCATTTGGTTGTGGACACATGACTTGCAGAGAGTGTGGATCGAAAATTCGCAAGTGTCATATATGTCGAAAGAAGATCACTGATCGAATTAGGTTGTTCCCAGGCTGA 1536 0.3691 MLLMVVVMDQDCSLKFLLVMIILFLGFIAWLENKVANSNEANKQRDEEVEVSDEILLFEQEDEENKLNEYCVCSFCGKFRNIIKRCSRCKNAIYCSKACHIMHWRFWHKDECVEIVSAEEHEESSFHGTQCFLLEHGNENSKYSFNDDDDEHKPYEGDVYYIESIKETAIGLQHGGCAVCGNPCSQKCSRCKAIKYCSQACQHFDWKLGHKLQCCVKKTSSTQVTTSNQEWPTDENVIMPPNPDEVVDNDHSYDPLCLEFYSEENTNNKALILISQEANNKVQEVEEKMRNLKDELEMIRSENMTLQSKLNYWEIRAKYSSDRLYSFKKENEHQLIILKHENELISNAEKQARQMVTNLSQRLHCLQIAMETGVAERKKQEEFIHMLQNECAKTKREFHEQNKYVERLRQKLDNVPQFPIRMAEETKQKLTIPSKAILADESKAAVVEVYKTISLSRNPTLTSQSCTICLSNEKDLAFGCGHMTCRECGSKIRKCHICRKKITDRIRLFPG* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1445 511 Coils Coil 268 309 - -
Mtr8g1445 511 ProSiteProfiles Zinc finger MYND-type profile. 177 214 IPR002893 -
Mtr8g1445 511 ProSiteProfiles Zinc finger RING-type profile. 466 499 IPR001841 -
Mtr8g1445 511 SUPERFAMILY HIT/MYND zinc finger-like 69 114 - -
Mtr8g1445 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 510 IPR013083 -
Mtr8g1445 511 Coils Coil 338 358 - -
Mtr8g1445 511 SUPERFAMILY HIT/MYND zinc finger-like 174 217 - -
Mtr8g1445 511 Pfam MYND finger 73 112 IPR002893 -
Mtr8g1445 511 Pfam MYND finger 177 214 IPR002893 -
Mtr8g1445 511 PANTHER CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING 94 509 - -
Mtr8g1445 511 SUPERFAMILY RING/U-box 456 505 - -
Mtr8g1445 511 ProSiteProfiles Zinc finger MYND-type profile. 73 112 IPR002893 -
Mtr8g1445 511 PANTHER OS06G0252500 PROTEIN 94 509 - -
Mtr8g1445 511 Gene3D - 159 220 - -
Mtr8g1445 511 Gene3D - 54 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1445 Mtr-Chr8 18022512 18029511 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1445 177 214 Miscellaneous Gene Families AT4G31670 55.263 1.05e-08 55.8