Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1443 ATGCAAGTTTTTGTGGCAACATCATTGGACCTTATTAATTGGCTTCTTGGTTTGTTTGGTTCTTCTAAAAAGAAAGTACACATTTCTGATCATAGCAACAAAATTGATGAATCTTTGTCCCTCCCATTACACATATTTTTTATAATTGTGATTGGTCTTGTGTTTTTTCACTTGTATTGGTTCGGTGAAAACAATCACAATACCAACGAGGTTGAAGAAGAGGAACTGGAGCACCCCGTCGATGAATCAGACCGTGATTTTGTTTGGGATTGGCAGCTTAGTCCCCGGACATCTGAGCATGGTGATGCGGCCAAAAGACACACTCCGTGTGCATTTTGTGGCGATCTAAGTACCACAAGATGCGCTCGCTGCAAGGTTGCTAGATATTGCTCAGAAGAATGCCAAATTGGACATTGGAGGTCGTGGCATAAATATGAATGCTTTGAAATGGAGAGTGAAGAAGGTCATGCAAGAGAAGAAACCCCTATGCTTGTCGAGGAAAAGTATGATAATCAGGAGAGTATCCCAAATGGGTCTTTGAGTTCAAATGTGGTAGTTGATGATGGATCAAGTAGTAGCAGTGATGTAAACTCTCATATTAGCTGTGTAGAATGTGGTAGCCCAAGTACCACCAGATGCGCACGATGCAAATCCGTCAGATACTGCTCTACAAAGTGCTTGATTGCAAATTGGAGATGGCATAAGTATAACTGCATTGCAGAGGATGTGAATTCAGCTCCAACAGAAAGACCTGATAGAAATGTTGGAGTGCTCAAGCATTCTAATAAAGAAGAAGAGAGTATTCCTTCATCCAAGCCTCTCTATTTGGAGCTTCATCCAGAAGGAACCTCAAATTTCAAGTCTCCAAGTGAAGTATCACAGGTTACTACCAAGGAATATCAAGTGCATAAAACTCAATGGGTGAAATACCTTGAAGATGAACTTGTGAAGTCTAGGAAACAAATTTTGGCGATACAATCAGAGCGTGACGATTGGAAGGGGCGAGCAAATTTCGCTAGAGAGATGTTTCAAAGATTCAAGGAAAAAACTGAAAACCAATTGTTTGTGTTGAGAAATGAAAATGAGTCAATATCAAATGCTGAGAAGAAAGCTTCCAATGTAACTCATAGTTTACATGAGAGGCTAAACCACTTGCAGATTGCAGCACAAGAAAACTTTGCAGAGAAGAGAAGGTTAGAAGAACATATACAAATGGTAGAGAGTGAATGTGCTACGCTGAAGAAGGAACTACAAGAAGAGCATAAACATGCTCAATATCTTACACTAGAGTCTAACAAGAGTCACGAGACCGCACAAATTGCCATAAGAGAAGTTGAAGTGGTAAGACAAGAGCTTTTAGAAGAGCGTAAACATGTCGAACGAGTTAAAGAGAATTTCATTAGAGAAGTTACATTTGTTGAATCAAGAGCTATTTTTGCTGAGGCAAAACTCAGTGATCTTCAGAGGAAAATCAAACTGACAGATCATAAGGTTCTTGTCAAGACAGACAGTTTAGGAAAACCTTCCACGGCATGCACTATATGTTTGACCAATGAAAAGAACATGGCCTTTGGGTGTGGACACATGACATGCAGAGACTGTGGATCCCAATTATCAAAGTGTCCAATATGCCGTGAGCAGATCACAAGTCATATTAAATTGTTTCCTGGGTGA 1674 0.4008 MQVFVATSLDLINWLLGLFGSSKKKVHISDHSNKIDESLSLPLHIFFIIVIGLVFFHLYWFGENNHNTNEVEEEELEHPVDESDRDFVWDWQLSPRTSEHGDAAKRHTPCAFCGDLSTTRCARCKVARYCSEECQIGHWRSWHKYECFEMESEEGHAREETPMLVEEKYDNQESIPNGSLSSNVVVDDGSSSSSDVNSHISCVECGSPSTTRCARCKSVRYCSTKCLIANWRWHKYNCIAEDVNSAPTERPDRNVGVLKHSNKEEESIPSSKPLYLELHPEGTSNFKSPSEVSQVTTKEYQVHKTQWVKYLEDELVKSRKQILAIQSERDDWKGRANFAREMFQRFKEKTENQLFVLRNENESISNAEKKASNVTHSLHERLNHLQIAAQENFAEKRRLEEHIQMVESECATLKKELQEEHKHAQYLTLESNKSHETAQIAIREVEVVRQELLEERKHVERVKENFIREVTFVESRAIFAEAKLSDLQRKIKLTDHKVLVKTDSLGKPSTACTICLTNEKNMAFGCGHMTCRDCGSQLSKCPICREQITSHIKLFPG* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1443 557 Coils Coil 442 469 - -
Mtr8g1443 557 Coils Coil 347 367 - -
Mtr8g1443 557 Pfam MYND finger 202 238 IPR002893 -
Mtr8g1443 557 Pfam MYND finger 110 147 IPR002893 -
Mtr8g1443 557 SUPERFAMILY RING/U-box 499 551 - -
Mtr8g1443 557 PANTHER PROTEIN, PUTATIVE-RELATED 20 555 - -
Mtr8g1443 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 556 IPR013083 -
Mtr8g1443 557 PANTHER COPINE FAMILY PROTEIN 1 20 555 - -
Mtr8g1443 557 SUPERFAMILY HIT/MYND zinc finger-like 105 150 - -
Mtr8g1443 557 ProSiteProfiles Zinc finger MYND-type profile. 110 147 IPR002893 -
Mtr8g1443 557 ProSiteProfiles Zinc finger MYND-type profile. 202 238 IPR002893 -
Mtr8g1443 557 SUPERFAMILY HIT/MYND zinc finger-like 199 239 - -
Mtr8g1443 557 Coils Coil 396 423 - -
Mtr8g1443 557 SMART ring_2 512 544 IPR001841 -
Mtr8g1443 557 Pfam Zinc finger, C3HC4 type (RING finger) 511 550 - -
Mtr8g1443 557 Gene3D - 186 243 - -
Mtr8g1443 557 Gene3D - 94 153 - -
Mtr8g1443 557 ProSiteProfiles Zinc finger RING-type profile. 512 545 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1443 Mtr-Chr8 17992974 18002403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1443 110 147 Miscellaneous Gene Families AT4G31670 52.632 2.48e-07 51.6