Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1427 ATGGGCGTGGTGATAATCGACGGCACCACCGTGCGAGACTTCATCGCCGACGATACACATTTCACAAACAGCATCAACGAACAATTCACCTCCCTCGATCTGAACAACGACGGCGTTCTATCACGCGCCGAGCTTCGCAAAGCATTCGAATCCATGAGACTAATCGAATCTCATTTCGGCATCGACGTAACAACCCCGCCGGAGCAACTCACGCGCCTCTATGACTCCGTTTTCGATACTTTCGACGGCGATGGAAGCGGGAGTGTTGATCGTGAAGAGTTTAAGAATGAGATGAAGAAGATTATGCTTGCTATTGCTGATGGATTAGGTTCTTCGCCTATTCAGATGGTTCTTGAAGATGATGATGAGATGAATCTTTTGAAGAAAGCTGCTGATCTTGAAGCTTCTAAAAACGCTGCCGTTTGA 426 0.4742 MGVVIIDGTTVRDFIADDTHFTNSINEQFTSLDLNNDGVLSRAELRKAFESMRLIESHFGIDVTTPPEQLTRLYDSVFDTFDGDGSGSVDREEFKNEMKKIMLAIADGLGSSPIQMVLEDDDEMNLLKKAADLEASKNAAV* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1427 141 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Mtr8g1427 141 SMART efh_1 73 101 IPR002048 GO:0005509
Mtr8g1427 141 SMART efh_1 24 52 IPR002048 GO:0005509
Mtr8g1427 141 Gene3D - 55 137 - -
Mtr8g1427 141 Gene3D - 21 54 - -
Mtr8g1427 141 SUPERFAMILY EF-hand 24 103 IPR011992 -
Mtr8g1427 141 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Mtr8g1427 141 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 138 - -
Mtr8g1427 141 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN 1 138 - -
Mtr8g1427 141 Pfam EF-hand domain pair 24 98 IPR002048 GO:0005509
Mtr8g1427 141 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Mtr8g1427 141 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1427 Mtr-Chr8 17770412 17771111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1427 1 137 EF-hand Containing Proteins AT2G44310 71.533 1.56e-68 201