Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1418 ATGCCATTCTCATATGTCAATAGATTTTTCAATATGTTTTGGGTTGATGATTTCCAAACTGGTATGTTGCCATCTCTTGGAGCAAGAGTCCACCAAGAAACTAAACTAAGAAGTTACATAATCTCCCCCTTCAATCGAAATTACTGGGCTTGGGACAAGTGGTTGATAATTCTAGTGCTTTACTCTGCATGGATATGCCCCTTTCAATTTGCTTTTCTGCCTCAAAAACATGACACACTATTCATCATAGATAACATTGTGAATGGTTTCTTTGCAATTGACATAGTGATGACATTCTTTGTTGCATATCTTGATAACCATTCTTACCTTCTTATTGATGATCATAAGAAAATTGCAAAAAGGTACCTATGTACCTGGTTTATCTTTGATGTTTGTTCAACTGCACCTCTTCAAGCCATTAGCTCCATATTCACTGATCATAGCAGCGAGTTTGGATTCAGAATTCTTGACATGCTTCGTTTATGGCGTCTCAGACGAGTCAGTTCACTCTTTGCAAGCCTTGAGAAGAACATTCGCTGGAATTACTTTTGGATTAGATGCATAAAGCTCATTGCGGTGACCTTGTTTGCAGTACACTGTGCTGGATGCTTTAACTATTTACTTGCAGATAGGTACCATGATTCAAAAAGGACATGGATTGGTTCTGTGTACCCTGATTTTAAGGAAATGAGTCTTTGGGATAGATATGTGATAGCAATGTATTGGTCAATTGTGACACTAACTACTACTGGATATGGAGATTTGCATGCTAATAACACTCAGGAGATGTTGTTTGACATTGGCTATATGTTGTTCAACTTGGGATTAACAGCTTATATCATTGGAAACATGACAAATCTTGTTGTTCAATGGACAAGTCACACCAGAAATTTTAGAGATACAGTGAGAGCAGCAACAGAATTTGCATCAAAAAATCATCTACCTCATGAGACACAGGATCAAATACTATCACACTTATGTCTCAAGTTCAAAACAGAAGGACTAAAACAGCAAGAAACAATAAATGGCATGCCGAAAGCAATTCGCGCAAGCATTGCACACCATCTTTTTTATCCTGTTGTGCAGAAATCCTATCTCTTCCAAAGAGTTTCACATGATTTTCTATTTCAACTGGTTACAGAAATAGAAGCAGAGTATTTTCCACCTAAAGTAGATGTTATGCTACAAAATGAGTCTCCAACAGATCTTTACATGTTAGTCTCAGGGTCAGTGGATCTCATTCGCAGTGTTGATGGTCGTGATCAAGTTTTGATGAAGGCAAGTGCAGAAGATACATTTGGAGAGATTGGAGTTTTATACAATAAGCAACAACCATTCACTGTTAGGACCAAAGAGCTTTCACAAATTTTAAGGCTTAGCAGAACTTCATTGATGAATGCCATACAAGCAAATCCAGAAGCAGCACCAATTATAATGTCAAATCTTTTTATGAGGTTAAGTGGTCAAGAAGATTTGGGTTTTGGACATCCACCTACTAGATTGTCTCTTGATGACATACAAGTTGGAAACAACACAAGGAGAAATTCACATGATGAATTTACAAAAAATTCACATGGGGAAGACATATTGCATGACATGATACCTAACATGATTGAAAATCAGCCAGAAAAAGAAGCAAATGAAAAGAAGCTAAGTCCTGTTAGATGGAAACAGAAAGATCAAGAAGACAAGCAACAAAACAAGAGTCATGAAAATGGACAGACATTAGATGAACATATAATAGACTTTATGGAGACAGATAATCTTAGCCATGTTAGGAGTGACCAAATTTCTTTAGGAGCAAGTAACCATCAAATCGAAAGAAAAAAACCGATTTTTGTTGATAAGAGAGTTACCATTCACTATGTAGGCCAAGACAGAACCACCTTACAAGGACAACATGGGAAGTTGATAATTTTACCTGATTCATTGGAAGAGCTGCTCAAGATTGTTGGAGAAAAGTTTGGAGGGCCAAAGCCTACAATAATACTAAATTCGGAGAATGCAGAGATAGATGAACTTTGCGTCATTCGAGATGGTGATCATCTGTTTTTTCTTTCCGGCGACAATGAAACTTTGAGTTAA 2085 0.3707 MPFSYVNRFFNMFWVDDFQTGMLPSLGARVHQETKLRSYIISPFNRNYWAWDKWLIILVLYSAWICPFQFAFLPQKHDTLFIIDNIVNGFFAIDIVMTFFVAYLDNHSYLLIDDHKKIAKRYLCTWFIFDVCSTAPLQAISSIFTDHSSEFGFRILDMLRLWRLRRVSSLFASLEKNIRWNYFWIRCIKLIAVTLFAVHCAGCFNYLLADRYHDSKRTWIGSVYPDFKEMSLWDRYVIAMYWSIVTLTTTGYGDLHANNTQEMLFDIGYMLFNLGLTAYIIGNMTNLVVQWTSHTRNFRDTVRAATEFASKNHLPHETQDQILSHLCLKFKTEGLKQQETINGMPKAIRASIAHHLFYPVVQKSYLFQRVSHDFLFQLVTEIEAEYFPPKVDVMLQNESPTDLYMLVSGSVDLIRSVDGRDQVLMKASAEDTFGEIGVLYNKQQPFTVRTKELSQILRLSRTSLMNAIQANPEAAPIIMSNLFMRLSGQEDLGFGHPPTRLSLDDIQVGNNTRRNSHDEFTKNSHGEDILHDMIPNMIENQPEKEANEKKLSPVRWKQKDQEDKQQNKSHENGQTLDEHIIDFMETDNLSHVRSDQISLGASNHQIERKKPIFVDKRVTIHYVGQDRTTLQGQHGKLIILPDSLEELLKIVGEKFGGPKPTIILNSENAEIDELCVIRDGDHLFFLSGDNETLS* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1418 694 Pfam Cyclic nucleotide-binding domain 387 470 IPR000595 -
Mtr8g1418 694 MobiDBLite consensus disorder prediction 544 576 - -
Mtr8g1418 694 MobiDBLite consensus disorder prediction 495 529 - -
Mtr8g1418 694 PANTHER POTASSIUM CHANNEL AKT1 1 686 IPR045319 GO:0005249|GO:0006813
Mtr8g1418 694 PRINTS EAG/ELK/ERG potassium channel family signature 61 68 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr8g1418 694 PRINTS EAG/ELK/ERG potassium channel family signature 84 94 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr8g1418 694 PRINTS EAG/ELK/ERG potassium channel family signature 95 104 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr8g1418 694 PRINTS EAG/ELK/ERG potassium channel family signature 236 253 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr8g1418 694 PRINTS EAG/ELK/ERG potassium channel family signature 262 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr8g1418 694 PRINTS EAG/ELK/ERG potassium channel family signature 280 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr8g1418 694 Gene3D - 52 289 - -
Mtr8g1418 694 PANTHER POTASSIUM CHANNEL KAT1 1 686 - -
Mtr8g1418 694 Gene3D Jelly Rolls 359 492 IPR014710 -
Mtr8g1418 694 SUPERFAMILY cAMP-binding domain-like 293 486 IPR018490 -
Mtr8g1418 694 Pfam Ion transport protein 51 295 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr8g1418 694 ProSiteProfiles cAMP/cGMP binding motif profile. 366 485 IPR000595 -
Mtr8g1418 694 ProSiteProfiles KHA domain profile. 617 694 IPR021789 -
Mtr8g1418 694 SMART cnmp_10 366 483 IPR000595 -
Mtr8g1418 694 Gene3D Helix hairpin bin 290 356 - -
Mtr8g1418 694 Pfam KHA, dimerisation domain of potassium ion channel 616 685 IPR021789 -
Mtr8g1418 694 MobiDBLite consensus disorder prediction 511 529 - -
Mtr8g1418 694 CDD CAP_ED 366 475 IPR000595 -
Mtr8g1418 694 SUPERFAMILY Voltage-gated potassium channels 43 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1418 Mtr-Chr8 17624948 17635018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1418 1 687 Ion Channels AT5G46240 57.204 0.0 795