Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1366 ATGCATATTCCAAAATCCGCAGCATCTTTCCTCATAGGCTGCGCTAAAAACTCTCTACAATTTCGCCACCGCAATTATCGATTTCTCACTTCGACTTCACCGTTGCTCTTACTCTCCACGCGCTTTTCTAAACCGTTTATATCTACGCGCTTCTTCTCTGGATATTATAACGTTGAACAGTTCTCTGATGATGAATATGAATGTGATTTCGAGAATCACCAGGCATCGTCTACCGTGGCCAACGTGGATGAGTGGAAATGGAAACTCAGTATGCTGTTACGGAATGAAAAGGATCAGGAAATTGTATCTAGAGACAAAAGAGATAGGAGAGACTATGAACAAATAGCTAACCTTGCCAAAAGAATGGGACTTTACAGTGAGCTGTTTGGGAAAGTAGTTGTTGCAAGTAAGGTGCCTCTTCCTAACTACCGACCAGATTTGGATGACAAACGTCCACAAAGAGAGGTTGTGATTCCACTAAGTTTGCAAAGGAGGGTGGAGGGTTTGGTGCAGGAGTACCTTGATAGACTACAATTAAATTCTGCAAAGACAACAGACTCTCTGGATAATCTGAATTCCACCAATCAGATTAGAGATATAGATATGGATGAAAATGCCAATTCTTTTGTCGATGAATCTGTTATGGAAAAGGTTCTCCAAAAGAGGAGTTTGAGGATGCGTAATATGCAAAGATCTTGGCAGGAATCACCTGAAGGCAAGAAGATGCTGGAATTCCGGAAGTCTTTACCAGCATTTAGGGAGAAGGAAGGTTTACTTCAAGCTATAGCACGTAATCAGGTAATAGTTATATCTGGAGAGACCGGCTGTGGTAAAACTACTCAACTTCCTCAATATATATTAGAGTCCGAGATAGAGTCCGGCCGTGGGGCATTTTGCAGCATTATTTGCACACAACCTCGAAGGATATCTGCTATGGCAGTTTCTGAGAGAGTTTCAGCAGAGAGAGGAGAGTCTCTGGGAGAAACAGTTGGCTTCAAAGTTCGGTTAGAAGGAATGAGAGGGAAAAACACCCATCTGTTATTTTGTACCAGTGGTATATTACTCCGAAGGTTGCTGAGTGATCGGAACCTGAGTGGTATAACCCATGTGTTTGTGGATGAAATTCACGAGCGAGGAATGAATGAAGACTTCTTACTGATTGTGTTGAAGGATCTTCTTCCACGTCGTCGTGATTTAAGATTGGTATTGATGAGTGCCACTTTGAATGCTGAACTTTTCTCAAATTATTTTGGAGGTGCACCGACATTTCATATCCCGGGTTTCACCTATCCCGTAAGAGCTCACTTTTTAGAAGATGTTTTGGAAATGACTGGATATAAGGTGACATCTTTCAACCAAGTTGATGATTATGGTCAAGATAAACTGTGGAAAACACAAAAGCAGCTTGCACCACGAAAGAGGAAAAACCAGATCACTGCTCTTGTTGAGGATTCCCTTTCTAAATCAAGCTTTGAGAACTATAGTCCCAAGACACGCGACTCGTTATCTTCCTGGGCACCTGACTGCATAGGATTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGACCAGGGGCCGTCTTAGTATTTATGACTGGGTGGGAAGATATAAGCTGTTTAAGAGATCAGCTTAAAGCACATCCTCTTTTAGGAGATCCCAATAGGGTTCTGCTTCAAACATGCCATGGTTCAATGGCAACTTCTGAACAGAAACTCATATTTGATAAACCTCCTCCAAATGTAAGGAAAATTGTACTTGCGACAAATATGGCAGAGGCAAGTATTACGATCAATGACGTTGTTTTTGTCATAGACTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTGAATAACACACCATGTCTGCTACCTTCTTGGATTTCACAAGCATCTGCACGGCAGAGAAGAGGTAGGGCTGGTCGTGTACAGCCAGGAGAATGCTACCACCTTTACCCCAAATGTGTTTATGAAGCCTTTTCTGAATATCAACTTCCTGAACTTTTGAGAACACCCTTGAATTCTCTTTGCTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATTGGAGAATTCCTATCATCAGCTTTGCAGGCACCAAAGCCACGTACCGTCCAAAATGCTATTGATTTTCTCACGATGATTGGAGCATTAGATGAAAAAGAAAATCTTACCAATCTTGGGAAGTTTCTCTCGATACTTCCTGTAGATCCCAAGCTGGGAAAAATGCTGATAATGGGAGCTATATTTCGGTGCTTTGATCCTGTTCTTACAATAGTTGCTGGCCTTAGTGTCAGGGATCCTTTCCTTTTGCCCCAAGACAAGAAAGATTTAGCAGGGACTGCAAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCTGAAAGAGAGGGATCAGCTTATGAATACTGCTGGAGAAATTTTCTCTCCGCCCAAACTCTTCAGGCAATTCATTCACTTCGGAAACAGTTCAGCTTTATCTTGAAAGAAGCTGGCTTGGTAGATACAGATGCAAGCATTAATAATAAATTGAGTCATAATCAATCTCTTGTACGTGCTGTCATATGTTCTGGACTCTTTCCTGGCATAGCATCGGTTGTGCACAGGGAGACATCCATGTCATTTAAGACAATGGACGATGGCCAGGTTTTATTATATGCAAATTCAGTGAATGCAAGGTACCAGACTATTCCCTACCCATGGTTGGTTTTTGGGGAGAAAGTAAAGGTCAATGCTGTTTTCATCCGCGATTCCACTGGTGTGTCTGATTCAATACTTATCCTATTTGGTGGTGCTTTAAGTAATGGGATACAGGCCGGGCATCTGAAAATGTTAGATGGATATGTTGACTTCTTTCTGGATCCTAATTTAGCTGACTGCTATTTGAAGCTTAAGGACGAACTTGATAAGCTTATCCAAAAGAAGCTAGAAGATCCAGGCATTGACATTCACAAGGAAGGGAAGTATTTGATGCTTGCTGTTCAAGAATTGGTTTCAGGGGATCAGTGTGAAGGAAGATTTGTGTTTGGTCGTGACAGCCGGAAGCCTAAGGCCTCTAACGACGAGAATAAATTCACTAAAGATGGAACAAACCCCAAGAGCTTGCTGCAAACACTTTTGATGCGAGCAGGGCACTCCGCACCAAAATATAAAACAAAACATCTGAAGACAAATGAGTTCAGGGCATTGGTAGAGTTTAAAGGAATGCAATTTGTTGGCAAACCGAAAAGGAATAAGCAACTTGCAGAAAGGGATGCAGCTATAGAGGCATTAGCTTGGTTAACTCACACCTCTGACAATGCTCAGCCTGAAGACGATAAATCTCCTCCTGATGTCACTGACAACATGTTAAAACTCCTAGGGAAGCGTAGAAAATCATCGAAACGACGTTCTGATTGA 3447 0.418 MHIPKSAASFLIGCAKNSLQFRHRNYRFLTSTSPLLLLSTRFSKPFISTRFFSGYYNVEQFSDDEYECDFENHQASSTVANVDEWKWKLSMLLRNEKDQEIVSRDKRDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEYLDRLQLNSAKTTDSLDNLNSTNQIRDIDMDENANSFVDESVMEKVLQKRSLRMRNMQRSWQESPEGKKMLEFRKSLPAFREKEGLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCSIICTQPRRISAMAVSERVSAERGESLGETVGFKVRLEGMRGKNTHLLFCTSGILLRRLLSDRNLSGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFGGAPTFHIPGFTYPVRAHFLEDVLEMTGYKVTSFNQVDDYGQDKLWKTQKQLAPRKRKNQITALVEDSLSKSSFENYSPKTRDSLSSWAPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLQTCHGSMATSEQKLIFDKPPPNVRKIVLATNMAEASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSSALQAPKPRTVQNAIDFLTMIGALDEKENLTNLGKFLSILPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVDTDASINNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFLDPNLADCYLKLKDELDKLIQKKLEDPGIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRDSRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSAPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNAQPEDDKSPPDVTDNMLKLLGKRRKSSKRRSD* 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1366 1148 SUPERFAMILY dsRNA-binding domain-like 1041 1126 - -
Mtr8g1366 1148 Pfam DEAD/DEAH box helicase 260 410 IPR011545 GO:0003676|GO:0005524
Mtr8g1366 1148 Pfam Double-stranded RNA binding motif 1048 1110 IPR014720 -
Mtr8g1366 1148 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 688 IPR001650 -
Mtr8g1366 1148 MobiDBLite consensus disorder prediction 1111 1148 - -
Mtr8g1366 1148 Gene3D - 509 667 IPR027417 -
Mtr8g1366 1148 Gene3D - 198 427 IPR027417 -
Mtr8g1366 1148 Gene3D - 1028 1115 - -
Mtr8g1366 1148 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 867 948 IPR011709 -
Mtr8g1366 1148 MobiDBLite consensus disorder prediction 1027 1047 - -
Mtr8g1366 1148 CDD SF2_C_RHA 503 656 - -
Mtr8g1366 1148 Pfam Helicase conserved C-terminal domain 517 647 IPR001650 -
Mtr8g1366 1148 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 259 426 IPR014001 -
Mtr8g1366 1148 MobiDBLite consensus disorder prediction 1027 1044 - -
Mtr8g1366 1148 SMART ultradead3 247 440 IPR014001 -
Mtr8g1366 1148 Gene3D - 690 791 - -
Mtr8g1366 1148 SMART helicmild6 542 648 IPR001650 -
Mtr8g1366 1148 Pfam Helicase associated domain (HA2) 711 784 IPR007502 GO:0004386
Mtr8g1366 1148 CDD DEXHc_RHA-like 265 425 - -
Mtr8g1366 1148 MobiDBLite consensus disorder prediction 1116 1137 - -
Mtr8g1366 1148 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 59 1041 - -
Mtr8g1366 1148 PANTHER ATP-DEPENDENT RNA HELICASE 59 1041 - -
Mtr8g1366 1148 SMART DRBM_3 1048 1111 IPR014720 -
Mtr8g1366 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 817 IPR027417 -
Mtr8g1366 1148 SMART ha2_5 710 801 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1366 Mtr-Chr8 16829271 16848488 Dispersed/Transposed