Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1363 ATGTTCCATGTTAAAGAAGAACAACAAGAAGAAGATCCTTCAATCAAGCTTTTTGGAAGTGATATTCAAATTCATACTCCCATTAACCAAACTCACACCACAGATTCACAGATTCACTCTCTTCCACATCAACAATCCATCATGAATGGACTTGAAGAATCAACTAATGCTGATGTTGAAGTTTCCAGCAAACAAGTTAATCCACAAGAAGATGCTAATGCTATTCCAAACATGTACAATACCGGTACTTTGAAACCGGTGACCAAAGCGGTTCACAGAACTAATGAACACAAGACTGCCAAAAGAGATACTGACAATCAAGAGAAAGTTTTCAAGAAGCCAGACAAGGTTCTGCCATGTCCTCGTTGCAATAGTTTGGAGACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCAAGGCATTTCTGCAAAAATTGTCAGAGGTATTGGACAGCTGGTGGAGTAATTAGGAATGTTCCTATTGGAGCCGGTAAGCGTAGAAATAAGCAATCGCCTTTGCAGAATTGTCAAGTTCCTGTTACCCTTGATGCAGTACCTGTCATACACATAGATTCCAAGGAGGAAGTTCCTCTTAGTGAATCAGTAGAAACTGTGTTAAATCTCAAGGGCCATAGAAAAATTGAAATGGACTCTTCTACTGTCAAAGAGGATATTGAGAACTCTTCCAGCTCTTCTGTGAGAGCTGCTGAATCCGGGGAAATGGAGTATTCAGAAAGTGGAATAGAGCATGTTGGTTTGACTTTGACACCACAATGCAATGGCTTAATTCCTTTACATTCGCTTCATTATTACTCTGCTCCTCCATGGACTTATCCATGTTGGAATCCAGTGGCATTTAAGTCTGATAACATAACTTCAAGTCCTGCAACCATGATGACAGTAGAAGTACCGATGACACCTTCATATTGGGGCTGCATGCCAAATTGGGTTGGCCAAATGGAAGAATTATCGTTAGTTGGATCTGCGTTCAACGGAATTCCATCCCCTTCATCTTCACCAACTTTAGGAAAACATTGTAGAGATGGAAGTACACAAGAAGAAGATATAATGAAGCCGAATATTTGGGTGCCGAAAACTATCAGAATTAATGATCCAGAAGAGGCTGCTAAGAGTTCTATATGGTCAACTTTGAGAACAAAATCTGAACAGAACAAACCTATTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAATGCAAGTTCTCGTGATTTAGACGATAATCAAATTCTAAGAGCAAACCCTGCAGCTTTCTCTCGCTCCGGATCCTTTCAGGAAAGCGTGTAA 1320 0.3947 MFHVKEEQQEEDPSIKLFGSDIQIHTPINQTHTTDSQIHSLPHQQSIMNGLEESTNADVEVSSKQVNPQEDANAIPNMYNTGTLKPVTKAVHRTNEHKTAKRDTDNQEKVFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGVIRNVPIGAGKRRNKQSPLQNCQVPVTLDAVPVIHIDSKEEVPLSESVETVLNLKGHRKIEMDSSTVKEDIENSSSSSVRAAESGEMEYSESGIEHVGLTLTPQCNGLIPLHSLHYYSAPPWTYPCWNPVAFKSDNITSSPATMMTVEVPMTPSYWGCMPNWVGQMEELSLVGSAFNGIPSPSSSPTLGKHCRDGSTQEEDIMKPNIWVPKTIRINDPEEAAKSSIWSTLRTKSEQNKPIMKGSVFKSFEPKSNASSRDLDDNQILRANPAAFSRSGSFQESV* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1363 439 MobiDBLite consensus disorder prediction 405 439 - -
Mtr8g1363 439 Pfam Dof domain, zinc finger 115 172 IPR003851 GO:0003677|GO:0006355
Mtr8g1363 439 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
Mtr8g1363 439 MobiDBLite consensus disorder prediction 397 439 - -
Mtr8g1363 439 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 15 439 - -
Mtr8g1363 439 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
Mtr8g1363 439 PANTHER CYCLIC DOF FACTOR 2 15 439 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1363 Mtr-Chr8 16802257 16805311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1363 83 438 C2C2-Dof Transcription Factor Family AT5G39660 37.310 3.86e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr8g1363 zf-Dof 3.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1363 - - cam:101489693 598.971