Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1355 ATGGAAGTTGAAGCACATGACGAAGGGAATGATAAAGATGGTAATGGAAATAGGAAACCACGAGTCGGCATGATCTTTGAATCTAAAGAATCTGCAGTGTCATTTTATAGTGCATATGCAAGACATGTAGGATTTAGCATCGGCTTTTGTCAATTCAACCATGTCGGTTCAATTGAATTTTGGGACATTACTTGTTCTAATGAAGTATTCAAAAGGAAGAATGTGGCAAGTTGCGATGCAATGCTTAGGATAGAGAGAAAAGATAAATATTGGACAGTGACAAAGTTTGTTGAGGACCACAGCCATTCTCTAGCTTCCTCTAAAACGGAGAAACACAGTCGGCCGCGTAGGCATTTTGTAGGTTCTAAAAGGAACGTTGGAGAGACATCCAATGCCAGTAATGATTCCTATGTTTCTATGAAGGGCAAACATGGCGAACCGATTGGTGTAGTTAAGAGTCCCTCTGCAGCAGAAAATGGTCATCCAACAAGAAACATTGGGCCTTTTGCCAATGGAAGATCATTCCGAAAGAGGACTCTTGGAGGAGATGCTCAATATCTTCTCAATTATTTTCAGAAGATGCAGTGTGAAAACCATGGCTTTTATTATGCAATACAGCTCGATGATAAAAACCACTTGACCAATGTATTCTGGGCTGATTCAAGATCAAGAGCAGCTTATAATCACTTTGGTGATGCGGTAACTTTTGACACAACGTATCGGACAAATCATTACCAAGTCCCAGTTGCTCCATTTACAGGAATCAATCATCACGGTCAAATCGTTTTATTCGGTTGTGCATTATTACTAGATGAATCTGAGTCTTCCTTTACATGGCTGTTCAGGACTTGGCTATCTGCTATGAATGGTCAGCCTCCCGTTTCGATAACCACAGACCAAGATGGAGTCATAAAGGCTGCTGTTGCGCAAGTGTTTCCAGAAACTCGCCACTGTATCTGTAAATGGCACATTTTGCGAGAAAGTCAAGAAAGATTGGCTCATATTTACCATGCATATCCTTCATTGTATGGAAAGTTTAATAGTTGCATTAATTCCTCAAAGACAGTTGAGGATTTTGAGTCAACATGCAAGTCTCTTCTACATAAATATGGTCTTGAAGGAAATGATTGGCTTGAAGCAGTGTATAATGCTCGGCAACAATGGGCCCCAGCTTACTTTCGTGACACATTCTTTGCTGCTTTAACTTCCAAACATGGAGCAAGCTCCTTTTTCAATGGCTATATAAACCAACAGACAACCGTGTCTTTATTCTTTAAGCAGTATGAAAAATGTCTCGAACATTCATTGGAAAAAGAAATAGAAGCGGATTACGAGACCATTTGTACCGAACCATTATTGAAGACTCCGGCACCAATGGAAAAACAGGCTGCTAATTCATACACTAAGAATATTTTTGCTAAGTTTCAGGAAGAACTCGTGAGAACTTCTGCTTATACTGCAAATAAAATTGAAGATGATGGTGTGATCTGTAAATACAGGGTTGCAAACTTTCAAGATAATCGTGAGGCATACACAGTCAGTGTTCCGTTAGATATTTCTGGGGCAAAGGCAAATTGTAGCTGTCGAATGTTTGAATACTCGGGCATTCTATGTCGACATATACTGACTGTCTTCACTGTTACAAATATTCTTACTCTTCCATCACACTACATTTTGAAACGCTGGACAAAGAATGTAAAATCCAGTGTTGGAACAGATGAAGAAATACCAGATCCACTCGGCATTGAAAATATCACTTCACGTTTTAATAATTTATGTCGAGAAGCCATTAAGCTTGCAGAAGAAGGGGCAGTAGCTGTAGAGACTTATAACGCTGCAAAGGATGCCTTAAGAGAGAGTACTAAAAGGGTTAGTGATGTGAAGAAAAATGTTGCAAAAGTCGCACCTCCAACTCCGAGCACTCGGGGTAATATGCCTGAAGAAGACAATAGCAAGATGAGTTCTTCATCAGTTTTTGAAGCAGTCCCATCATGGTGGTCTTGGCCACATTCAGTATTGCCTCACTTTAGTATTTGTGACATTGAACTTCCTTGTATTGCTCCTGCTCCTGCTCCTGCTCCTGTTCATCGGGATAGTGGCCCTCCACATAACGTTGTCCCTACTTCTTGTTTCAAGTCTATGACTTGGGTTATAGAAACGAAGAACTCAGACACTTCTAGTAAAGTTGCAGTGATCAACATGAAGCTGCAAGATTTCAGCCAAAGTTCTTCAGGAGAGACAGAAGTGCAGTTCAGAGTGACGAAGGTAGCTTTTCGGCCTATGTTGGAGTCAATGACTGACATCAGTTATCAGCTCGATGGAGCTGTTAATAGAATTGCTGATGTTAGTCTAAAGCTCCAGGATACAAAGACTACGAGGGAAACGGAGCTGAAATTCCAAGTTACCAGAGATTCATTGGATTTAATGTTGAATAATATGTACTACATCATTGAGCAACTATAA 2463 0.4028 MEVEAHDEGNDKDGNGNRKPRVGMIFESKESAVSFYSAYARHVGFSIGFCQFNHVGSIEFWDITCSNEVFKRKNVASCDAMLRIERKDKYWTVTKFVEDHSHSLASSKTEKHSRPRRHFVGSKRNVGETSNASNDSYVSMKGKHGEPIGVVKSPSAAENGHPTRNIGPFANGRSFRKRTLGGDAQYLLNYFQKMQCENHGFYYAIQLDDKNHLTNVFWADSRSRAAYNHFGDAVTFDTTYRTNHYQVPVAPFTGINHHGQIVLFGCALLLDESESSFTWLFRTWLSAMNGQPPVSITTDQDGVIKAAVAQVFPETRHCICKWHILRESQERLAHIYHAYPSLYGKFNSCINSSKTVEDFESTCKSLLHKYGLEGNDWLEAVYNARQQWAPAYFRDTFFAALTSKHGASSFFNGYINQQTTVSLFFKQYEKCLEHSLEKEIEADYETICTEPLLKTPAPMEKQAANSYTKNIFAKFQEELVRTSAYTANKIEDDGVICKYRVANFQDNREAYTVSVPLDISGAKANCSCRMFEYSGILCRHILTVFTVTNILTLPSHYILKRWTKNVKSSVGTDEEIPDPLGIENITSRFNNLCREAIKLAEEGAVAVETYNAAKDALRESTKRVSDVKKNVAKVAPPTPSTRGNMPEEDNSKMSSSSVFEAVPSWWSWPHSVLPHFSICDIELPCIAPAPAPAPVHRDSGPPHNVVPTSCFKSMTWVIETKNSDTSSKVAVINMKLQDFSQSSSGETEVQFRVTKVAFRPMLESMTDISYQLDGAVNRIADVSLKLQDTKTTRETELKFQVTRDSLDLMLNNMYYIIEQL* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1355 820 Coils Coil 610 630 - -
Mtr8g1355 820 MobiDBLite consensus disorder prediction 1 21 - -
Mtr8g1355 820 SMART 26again6 524 551 IPR006564 GO:0008270
Mtr8g1355 820 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 765 IPR031052 GO:0006355
Mtr8g1355 820 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 12 765 - -
Mtr8g1355 820 Pfam SWIM zinc finger 511 547 IPR007527 GO:0008270
Mtr8g1355 820 MobiDBLite consensus disorder prediction 1 18 - -
Mtr8g1355 820 Pfam MULE transposase domain 234 326 IPR018289 -
Mtr8g1355 820 MobiDBLite consensus disorder prediction 633 652 - -
Mtr8g1355 820 ProSiteProfiles Zinc finger SWIM-type profile. 511 549 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1355 Mtr-Chr8 16687822 16690775 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr8g1355 MULE 3.6e-28 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0230 3 2551185 2560517 Mtr8g1355 8 16687822 16690775 PCT