Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1335 ATGTCTTCCTTTAAGGCTTATGGTAAAGTCGACGAATCCGCCCAAGCCATGTTCGAAGTTCGAAGGAAATCGCGAAAGCGAATAACCATCATATGCTTGTCCACAGTTGTCCTTATTGGTATCGTTTTTGCAGCGGTGTTTGGAACCATTGCTCACAACAATGCTCGTAATGATGACAACAACAACAACGAGAATGATAACAACGATCAATCTCTTTCAAGTGCAATTAAGGCTGTTTGTGATGTTACACTGTACAAGGATTCATGTGAAAAAAGCCTTAGTCCTCTTGTTCAACCGGGTCAGCAAATTCGACCCGAGGAGTTGTTCAAATTGTCTATTCAAGTGGCATTAACTGCGGTATCGAAAGGTGTTGAGTATTTATCTGACCATGCAACTTTTAATGACTTGAACTTGAATTTAGATAATAGAACAAAGGAAGCTTTGATCAATTGTAAGGATCTTTTCGGTCTTGCTGTTGATGATTTGAATAGCTCTTTGTCTTATGGAGGGAAATCTTCTTTGCTTGATGTTTTGGAGGACCTTGAAACATGGTTGAGTGCTTCAGGTACTTACCAGCAAACATGCATTGATGGTTTAGAACAGGCAGAAGAAGCATTAAAGTCTAGTATTACAACCAATCTCAAAAACTCTACAGAGTTTACAAGCAACAGTCTTGCCATCATCACATGGCTCAACAAGGCTGCATCTTCGGTGAACTTTAGACGCTTATTGAGTTTATCGCATCAAAACGAAGAACCAAACTGGCTTCATCATAAAGACAGAAAGTTACTTCAAAAAGACAGTGATTTGAAGAAGAAAGCCGACATTGTTGTCGCGAAAGACGGGAGTGGGAAATACAAAACAATTTCAGCTGCATTGAAACATGTCCCTAATAAAAGTGACAAGAGGACAGTGATCTATGTGAAGAAAGGGATTTATTATGAGAATGTTAGGGTGGAAAAGACCAAATGGAATGTCATGATAATTGGTGATGGAATGAATGTTACTATTGTTTCTGGAAGTCTTAATTTTATAGATGGCACACCAACATTTTCAACAGCAACATTTGCTGTGTTTGGGAGAAATTTCATTGCCAGAGACATAGGCTTTAAGAACACAGCCGGTCCACAAAAACACCAAGCAGTAGCACTAATGACAAGTGCAGATCAAGCAGTTTTCTACAAATGTTCCATGGATGCATATCAAGACACACTCTACGCACACTCAAATCGCCAATTCTACCGCGAATGCAACATATACGGAACAGTCGATTTCATTTTCGGAAACTCAGCCGTCGTATTACAAAACTGCAACATTTTACCAAGACAACCTATGCCAGGACAGCAGAACACAATAACAGCACAAGGCAAAACTGATCCTAACATGAACACAGGAATTTCAATTCAAAATTGCAATGTTTCGCCTTTTGGAAACTTGAGTTCTGTTAAAACATATTTAGGTAGACCTTGGAAGAATTACTCAACAACAGTGTTTATGCAATCGAACTTGGGAAATTTTATTAGTCCAAATGGATGGTTACCTTGGGTTGGAGATTCTGCACCAGATACTATATTCTATGCTGAATTTCAGAATGTTGGAGGTGGTGCTTCCATGAAGAATAGGGTCAAGTGGAAGGGTTTGAAAACCATTACAAGTAAACAAGCTAATAAGTTTACAGTTAAGGCTTTTCTTAATGGAGATAGATGGATCCCTGCTTCTGGTGCTACATTTAAATCTTCTTTGTAA 1746 0.3883 MSSFKAYGKVDESAQAMFEVRRKSRKRITIICLSTVVLIGIVFAAVFGTIAHNNARNDDNNNNENDNNDQSLSSAIKAVCDVTLYKDSCEKSLSPLVQPGQQIRPEELFKLSIQVALTAVSKGVEYLSDHATFNDLNLNLDNRTKEALINCKDLFGLAVDDLNSSLSYGGKSSLLDVLEDLETWLSASGTYQQTCIDGLEQAEEALKSSITTNLKNSTEFTSNSLAIITWLNKAASSVNFRRLLSLSHQNEEPNWLHHKDRKLLQKDSDLKKKADIVVAKDGSGKYKTISAALKHVPNKSDKRTVIYVKKGIYYENVRVEKTKWNVMIIGDGMNVTIVSGSLNFIDGTPTFSTATFAVFGRNFIARDIGFKNTAGPQKHQAVALMTSADQAVFYKCSMDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNILPRQPMPGQQNTITAQGKTDPNMNTGISIQNCNVSPFGNLSSVKTYLGRPWKNYSTTVFMQSNLGNFISPNGWLPWVGDSAPDTIFYAEFQNVGGGASMKNRVKWKGLKTITSKQANKFTVKAFLNGDRWIPASGATFKSSL* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1335 581 Pfam Plant invertase/pectin methylesterase inhibitor 75 227 IPR006501 GO:0004857
Mtr8g1335 581 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
Mtr8g1335 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 233 IPR035513 -
Mtr8g1335 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 231 IPR035513 -
Mtr8g1335 581 SMART PMEI_2 71 227 IPR006501 GO:0004857
Mtr8g1335 581 PANTHER PECTINESTERASE 5 579 - -
Mtr8g1335 581 Gene3D - 270 581 IPR012334 -
Mtr8g1335 581 PANTHER PECTINESTERASE 5 579 - -
Mtr8g1335 581 Pfam Pectinesterase 275 567 IPR000070 GO:0030599|GO:0042545
Mtr8g1335 581 CDD PMEI-like_3 78 233 - -
Mtr8g1335 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 72 231 IPR006501 GO:0004857
Mtr8g1335 581 SUPERFAMILY Pectin lyase-like 273 577 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1335 Mtr-Chr8 16456482 16459073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1335 7 581 Carbohydrate Esterase AT3G10710 57.192 0.0 670
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0233 3 2592386 2597672 Mtr8g1335 8 16456482 16459073 PCT