Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1328 ATGGAAGATTCATTTGACAAATCTAAGATTGTTGAAGTCAAACCCTTACGTAGTTTAGCACCTGTTTTACCAAAACATGTTCAATCCGTGTTTTCTCGTGAATACCCATCTGGGTTTCCTCCATTTTACTCATTTGTCAAACCCCATCAAATTCCTCTTCCAAAAGAAGCTGAGGAAATCCCTCTTGATGACAAAGTAGCCGAGAAGACACCGGTGAAAGCAGCAGCAGCAGCAGCTCATGACACTCCTGTTGCTGCCAAAGTTACTCCAATAAGGGCCTACAAGAGTTCACATGATGAAGAAATGAATCAACAAGGCGATGGAGATAACAATGATTATTCGGAAGGGTTTATAGGTGATAAACAAAAGCGTAGTACGGATAATATTGAGAACTGCAAGGAGTTTCTTAGAAGGAAGAAGAACAAAACTCGCGAGGCGTCTGTTGGTGGTACGAGTTCTTATGTTGGTGTTAACCCGACACTAAAAGATGATGGTGATAGGGAATCGGTTAATCATGTGCTTATGACGTTTGATTCGATTCGAAGGAGGCTATGCCAACTTGAAGAGTCGAAGGAACTGAACAATGCACTTGCTATCAAGCGTGCGGATCTAAGAGCGAGTAATGCTTTGACTTGTAAAGGGTTTAAAACAAACACGAGGAGAAGAGCGGGTGTGGTGCCTGGGATTGAGATTGGGGATGTTTTCTTTTTTCGAATGGAAATGTGTCTTGTGGGTTTGCATGCTCAATCAATGGGTGGAATTGATTATATGAGTATCAAGGATGGGTCTAAGGAAGATACTGTGGCGTTAAGCGTTGTTTCGTCAGGTGTATATGGTGATGATACAGAGGATAATAATGTTTTAATTTATAGTGGTCAGGGTGAGAATTTCAACAAGAAAGATAAACATGTGACTGATCAGAAGCTTCAAAGAGGTAATCTTGCTTTGGATAGAAGTGCACAGCGGCACGATGAAGTTAGAGTCATTCGAGGTGTGAGAGATCCTATGAATAGAAGTGCAAAAATCTATATGTATGATGGTTTATATAAAATCCAAGATTCTTGGATTGAAAGAGGGAAATCTGGCGGTGGTATATTTAAGTATAAGTTGGTAAGGTTACCTGGTCAAAAAATTGCTTATGCTGCTTGGAAATTGGCTCAAAAGTGGAAGGCAGGTTCCTGTGCAAGGAATGGTTTTATTCTTGCAGACCTCTCCAATGGGGTTGAAAGTATTCCAGTATCACTTGTCAATGATGTCGATGATGAGAAAGGTCCTGCTTTTTTCACTTATTTCACATCTCTCAAAAACCCAAAACCTTTTGGTCTAGTGCAGCCTTCTTTAAGCTGCAATTGTAACACAGCATGTGTCCCAGGTGATTTGAACTGTTCATGCATTCAAAGAAATGAAGGTGATTTTCCGTATACTGCAAATAGTGTTCTAGTGAGTCGGAAGCCGCTTATTCATGAATGTGGCCCTATGTGTCGGTGTTTTCCTACTTGCAAAAATCGAGTATCACAGACTGGTTTAAAACAACACATGGAAGTGTTCAGAACAAAGGGTAGAGGTTGGGGGCTTCGAACACTGGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTATTAACAGAGCCAAGGTATATCAGAACGTTGAAGGAGATAATGACGAATATGTTTTTGATACAAGCCGTATTTATGAACCATTCAAGTGGAATTATGAACCTAGCTTACTGGAAGATGTAAGTTCAAATGTATGTAGTGAGGATTATACAATACCATCTCCTCTAATTATAAGTGCCAGGAATGTGGGAAATATAGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTTTGGCAGCCAGTCTTATATGCGGAAAATAATCAATCCTTTATCCACATTGCATTTTTTGCCCTTAGACATATTCCTCCAATGGCAGAGTTAACATATGATTATGGAATTACCCATGCTGGTCATGCTGGTGGTAGTAGTGCACTTAGAAGGAGAAAGAAATGCTTGTGTGGATCAGCAAGGTGCCGTGGTTTCTTTGGTTGA 2067 0.4025 MEDSFDKSKIVEVKPLRSLAPVLPKHVQSVFSREYPSGFPPFYSFVKPHQIPLPKEAEEIPLDDKVAEKTPVKAAAAAAHDTPVAAKVTPIRAYKSSHDEEMNQQGDGDNNDYSEGFIGDKQKRSTDNIENCKEFLRRKKNKTREASVGGTSSYVGVNPTLKDDGDRESVNHVLMTFDSIRRRLCQLEESKELNNALAIKRADLRASNALTCKGFKTNTRRRAGVVPGIEIGDVFFFRMEMCLVGLHAQSMGGIDYMSIKDGSKEDTVALSVVSSGVYGDDTEDNNVLIYSGQGENFNKKDKHVTDQKLQRGNLALDRSAQRHDEVRVIRGVRDPMNRSAKIYMYDGLYKIQDSWIERGKSGGGIFKYKLVRLPGQKIAYAAWKLAQKWKAGSCARNGFILADLSNGVESIPVSLVNDVDDEKGPAFFTYFTSLKNPKPFGLVQPSLSCNCNTACVPGDLNCSCIQRNEGDFPYTANSVLVSRKPLIHECGPMCRCFPTCKNRVSQTGLKQHMEVFRTKGRGWGLRTLDPIRAGTFICEYAGEVINRAKVYQNVEGDNDEYVFDTSRIYEPFKWNYEPSLLEDVSSNVCSEDYTIPSPLIISARNVGNIARFMNHSCSPNVFWQPVLYAENNQSFIHIAFFALRHIPPMAELTYDYGITHAGHAGGSSALRRRKKCLCGSARCRGFFG* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1328 688 Gene3D SET domain 393 687 IPR046341 -
Mtr8g1328 688 SMART set_7 511 663 IPR001214 GO:0005515
Mtr8g1328 688 MobiDBLite consensus disorder prediction 96 122 - -
Mtr8g1328 688 SUPERFAMILY PUA domain-like 207 393 IPR015947 -
Mtr8g1328 688 SUPERFAMILY SET domain 410 685 IPR046341 -
Mtr8g1328 688 SMART G9a_1 219 376 IPR003105 -
Mtr8g1328 688 Pfam Pre-SET motif 405 503 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr8g1328 688 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 4 686 - -
Mtr8g1328 688 ProSiteProfiles YDG domain profile. 224 372 IPR003105 -
Mtr8g1328 688 Pfam SET domain 522 657 IPR001214 GO:0005515
Mtr8g1328 688 ProSiteProfiles Pre-SET domain profile. 447 508 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr8g1328 688 ProSiteProfiles SET domain profile. 511 657 IPR001214 GO:0005515
Mtr8g1328 688 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 4 686 - -
Mtr8g1328 688 Gene3D - 206 388 IPR036987 -
Mtr8g1328 688 SMART preset_2 401 495 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr8g1328 688 ProSiteProfiles Post-SET domain profile. 672 688 IPR003616 -
Mtr8g1328 688 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 62 688 IPR025794 GO:0016571
Mtr8g1328 688 Pfam SAD/SRA domain 223 376 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1328 Mtr-Chr8 16371805 16378211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1328 6 688 Su(var)3-9 homologs AT5G04940 47.076 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr8g1328 SAD_SRA 1e-45 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0257 3 2839426 2843642 Mtr8g1328 8 16371805 16378211 PCT