Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1319 ATGATGAGGCGGATGAAAAAGGAGATTGAGGATGAAATGCTCGACGATGATCGGATTGGGTCAGAGTTTAATGATGAGGAGTATGACAGAAGTGCCCGTGGAGTTCTTCTAAAGAAAGGGCCATGGACATCAGCTGAAGACGATATTTTGGTCAATTATGTCAAGAAGAACGGAGAGGGGAACTGGAATGCTGTTCAGAAGCAGACAGGCCTGCTACGTTGCGGAAAAAGTTGTCGATTGCGGTGGGCTAATCACCTTAGGCCAAATTTAAAGAAAGGGACATTTACTGCAGAAGAGGAGCAGTTGATTTGTGAGCTTCATGCAAAATTGGGAAATAAATGGGCACGCATGGCAGCACATTTACCTGGTCGTACAGATAACGAGATAAAGAACTATTGGAACACTCGGATCAAGAGGCGTCACCGGGCTGGCTTGCCACTTTATCCTCCTGAAGTATTGCAACAGACTCTTCATGGCCAAAGCACCGATGGAATTAACAGCGGCAACAAAGTGCATCCTGATTTCTTGCAGAAAAAGAATTTTGATATACATGATGCAATATATGACTGTATGAAGGATAACCAGGGAATGTTACCTTATGTTGCTGAGCTTCCTGATATTTCTGCTTATAGCAATATGCTAAATGGTTTTGATTCTTCTCAGTATAGTAGTTTTGGGCAATCAACATCATCTAACCACAAACATTTTCGAGATTCAACAATTCCATTCCTTGATTTCAGTTGTATCGACAGAAATGGTTATTATCCATTTGATCATATTCAGGATGATACTTTTTATAAGTGGACACAATCATTTGGCATGCAATCACCCCTTCATCATGCTGGCCCCTCCTCTCACAGCTCAATGTGTTACAGCCATTCACTAAAAAATGGAAATTCCTCCACTTCTAAGCCTTTCGAGGAGCTTCCTTCAATCCAATATCCAGAAACTGATTTAGGTAGCTGGGGCACATCTCCCCCACCTCCTTTACTAGAGTCAGTTGATGATTTCATTAAGTCTCCTACACCAATTAGTACACTGGAGTCAGATTGTTCTTCTCCACAGAATAGTGGCCTGCTACAATCTGTACTTTATCCGCGGAAGACTCCAAGCAGTTCAAAAAACCAATTTTATGGCAAGAGTTCAAATTCATCTACTGCAACTCCTGGTGAAAGAGCAGACAGCTCTGCTTTGAACATGTATGATACAGAATGGGAAGAATCTGCTGACCCTGTATCTCCATTTGGCACATCTTCAATATTGAACGAGTGCCCTGCTGTTAGTGCCAACAGAAGTTCACTGGATGAGCAGCCACCAGTTCATACTGTTAATGGCAACACTGTGAAACTAGAGTATGTTGACCCGGTTTGGACCCCTGACAGTGGAAATCAAATCACGTCTCTGTTGAACTTTAGTCGGCCAGATTTCTTGCTTGGTTCAGATTGGTATGAGCAATGTTCTGGGAATGACCAGAACCAATCCATCTTCTATGATGCTACGTCGATGTTTCTCGAAGATCAATCAGCCACCGACTATAAACACATGACTGCTGGAACTTCTAACCCAAGTCAGGTAAGGGAGTTTGGTTCTTGTGCATGGAACAACATGCCTCCTGTCTGTCAAGTATCTGATCTTGGTTAA 1641 0.4272 MMRRMKKEIEDEMLDDDRIGSEFNDEEYDRSARGVLLKKGPWTSAEDDILVNYVKKNGEGNWNAVQKQTGLLRCGKSCRLRWANHLRPNLKKGTFTAEEEQLICELHAKLGNKWARMAAHLPGRTDNEIKNYWNTRIKRRHRAGLPLYPPEVLQQTLHGQSTDGINSGNKVHPDFLQKKNFDIHDAIYDCMKDNQGMLPYVAELPDISAYSNMLNGFDSSQYSSFGQSTSSNHKHFRDSTIPFLDFSCIDRNGYYPFDHIQDDTFYKWTQSFGMQSPLHHAGPSSHSSMCYSHSLKNGNSSTSKPFEELPSIQYPETDLGSWGTSPPPPLLESVDDFIKSPTPISTLESDCSSPQNSGLLQSVLYPRKTPSSSKNQFYGKSSNSSTATPGERADSSALNMYDTEWEESADPVSPFGTSSILNECPAVSANRSSLDEQPPVHTVNGNTVKLEYVDPVWTPDSGNQITSLLNFSRPDFLLGSDWYEQCSGNDQNQSIFYDATSMFLEDQSATDYKHMTAGTSNPSQVREFGSCAWNNMPPVCQVSDLG* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1319 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 86 IPR017930 -
Mtr8g1319 546 MobiDBLite consensus disorder prediction 318 337 - -
Mtr8g1319 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Mtr8g1319 546 Gene3D - 38 91 - -
Mtr8g1319 546 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Mtr8g1319 546 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Mtr8g1319 546 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Mtr8g1319 546 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Mtr8g1319 546 MobiDBLite consensus disorder prediction 370 393 - -
Mtr8g1319 546 Gene3D - 94 140 - -
Mtr8g1319 546 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Mtr8g1319 546 CDD SANT 41 86 IPR001005 -
Mtr8g1319 546 SMART sant 91 139 IPR001005 -
Mtr8g1319 546 SMART sant 38 88 IPR001005 -
Mtr8g1319 546 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 2 542 - -
Mtr8g1319 546 MobiDBLite consensus disorder prediction 370 395 - -
Mtr8g1319 546 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 2 542 - -
Mtr8g1319 546 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1319 Mtr-Chr8 16243272 16247657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1319 30 539 MYB Transcription Factor Family AT3G11440 41.978 5.84e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr8g1319 Myb_DNA-binding 1.3e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0265 3 2926759 2932240 Mtr8g1319 8 16243272 16247657 PCT