Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1306 ATGTCCAATAAAATTCTTGGAATGGTTAATGAAAAAAATTCAACCATGAAAATGTCAAAACACAACATGACTTGTACTACAAGGTTTCTAAGCTTCATTTTCCTTCATTTCTTCCTCTTCATGATCCTAACAACTGCACAATCACCATTTTACTTGTACAGTATTTGCGAGAATTCAACAGAAAAAACACTTAACACTTCATACCAATCCAACGTTAATAGCCTTCTCTCATGGATAAACTCAGATTCTGACTTAGGCACAATATCTAACCACAACATCATAGGTAGCAACAACAGCGATGATCATGACAATGTTTATGGGTTATACGGTTGTCGAGGTGACATCACAGGAAGTTTCTGCCGATTCTGTATCAACACTGCTGTTAGAGAAATCGCTCAACGTTGTCCTAACAGTGTTTCGGCTTTGATATGGTATGATGTATGCGTCATGGGTTACACAAACCAGAATACGACAGGAAAAGTTATTGTAACACCATCATGGAATATAACCGGATCCAGAAACGTTAAGGACTCAACAGAACTTGGGAAAGCTGAGAATAACATGATGAGTTTGATACGCAAAGTGACTACAGAATCCAGTCCCGTTTGGGCAACGGGTGAGTTCATTTGGAGTGACACCGAGAAAAGGTATGGTTTGGTGCAGTGTAATAGAGACCTTAGTAAGGATGGGTGCAAAGAGTGTCTAGAGGCTATGTTGGATTTAGTTCCTCAGTGTTGTGGAACAAAGGTAGCGTGGGCCGTTATGTCTCCTAGCTGTGGGCTTAAAATTGATGATTATATGTTCTACCAACTGCAAACAGAATCTCCTCCTATGCCGAATCCAGGCAAGCAGGAAGGTACAAGTAAAGCTAAAACCTTGATCATCATCTTCGTAAGTATAACAGTGGCAGTAGCTCTACTAAGCTGTTGGGTCTACTCTTACTGGAGAAAGAATAGGTTAAGTAAAGCTTCCTTGCTAGGTGGTATGCTGTCGAGGACCATTACACCTATATCTTTCCGTAATCAGGTTCAAAGACAGGATTCATTCAATGGAGAACTTCCTACAATCCCTTTAACTATAATTGAACAAAGTACCGATGACTTTTCAGAGTCATATAAATTAGGAGAAGGTGGATTTGGCCCAGTTTACAAGGGTACTTTACCAGATGGCAGAGAAGTTGCTGTCAAAAGGCTTTCGGAAACGTCGAGTCAAGGTTCAGAGGAGTTCAAGAATGAAGTAATATTCATAGCTAAACTGCAACATAGAAACCTTGCAAAACTCTTGGGTTACTGCATTGAGGGAGATGAAAAAATACTAGTATATGAGTACATGCCGAATTCAAGCCTTGACTTTCACCTTTTCAATGAGGAAAAACATAAGCATCTAGATTGGAAATTACGACTAAGCATTATCAATGGAATTGCAAGAGGATTGCTATACCTTCATGAGGATTCTCGACTTAGAGTAATCCACAGAGATCTGAAAGCCAGCAATGTTCTTCTGGATGATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAACATTTGATAAAGACCAATGTCAGACAAAAACAAAAAGAGTTTTTGGCACCTATGGATACATGGCTCCTGAATACGCTATGGCTGGGTTATTTTCAGTGAAATCCGATGTTTTCAGCTTTGGAGTTCTTGTGTTAGAAATAATATACGGAAAAAGAAATGGCGACTTCTTTCTTTCAGAACATATGCAAAGTCTTCTACTATATACTTGGAAACTCTGGTGTGAAGGGAAATGTTTGGAATTAATCGATCCATTCCACCAAAAAACATACATTGAAAGTGAAGTCTTGAAGTGTATACACATTGGTTTACTTTGTGTACAAGAAGATGCAGCAGATCGACCAACGATGTCCACCGTTGTTCGCATGCTAGGGAGTGACACAGTAGACCTTCCGAAACCCACGCAACCAGCATTTTCAGTTGGCAGAAAGTCCAAGAATGAAGATCAAATTTCAAAAAATTCTAAGGATAATTCTGTTGATGAAGAAACCATAACTATTGTTTCACCTAGATAG 2061 0.3901 MSNKILGMVNEKNSTMKMSKHNMTCTTRFLSFIFLHFFLFMILTTAQSPFYLYSICENSTEKTLNTSYQSNVNSLLSWINSDSDLGTISNHNIIGSNNSDDHDNVYGLYGCRGDITGSFCRFCINTAVREIAQRCPNSVSALIWYDVCVMGYTNQNTTGKVIVTPSWNITGSRNVKDSTELGKAENNMMSLIRKVTTESSPVWATGEFIWSDTEKRYGLVQCNRDLSKDGCKECLEAMLDLVPQCCGTKVAWAVMSPSCGLKIDDYMFYQLQTESPPMPNPGKQEGTSKAKTLIIIFVSITVAVALLSCWVYSYWRKNRLSKASLLGGMLSRTITPISFRNQVQRQDSFNGELPTIPLTIIEQSTDDFSESYKLGEGGFGPVYKGTLPDGREVAVKRLSETSSQGSEEFKNEVIFIAKLQHRNLAKLLGYCIEGDEKILVYEYMPNSSLDFHLFNEEKHKHLDWKLRLSIINGIARGLLYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARTFDKDQCQTKTKRVFGTYGYMAPEYAMAGLFSVKSDVFSFGVLVLEIIYGKRNGDFFLSEHMQSLLLYTWKLWCEGKCLELIDPFHQKTYIESEVLKCIHIGLLCVQEDAADRPTMSTVVRMLGSDTVDLPKPTQPAFSVGRKSKNEDQISKNSKDNSVDEETITIVSPR* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1306 686 Gene3D Transferase(Phosphotransferase) domain 1 444 647 - -
Mtr8g1306 686 Gene3D - 164 268 IPR038408 -
Mtr8g1306 686 Gene3D - 49 156 IPR038408 -
Mtr8g1306 686 SUPERFAMILY Protein kinase-like (PK-like) 348 639 IPR011009 -
Mtr8g1306 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Mtr8g1306 686 ProSiteProfiles Gnk2-homologous domain profile. 163 268 IPR002902 -
Mtr8g1306 686 Pfam Protein tyrosine and serine/threonine kinase 372 639 IPR001245 GO:0004672|GO:0006468
Mtr8g1306 686 Pfam Domain of unknown function (DUF3403) 641 686 IPR021820 GO:0004674
Mtr8g1306 686 SMART serkin_6 368 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1306 686 ProSiteProfiles Gnk2-homologous domain profile. 50 157 IPR002902 -
Mtr8g1306 686 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 41 684 - -
Mtr8g1306 686 PANTHER PROTEIN KINASE DOMAIN 41 684 - -
Mtr8g1306 686 CDD STKc_IRAK 374 639 - -
Mtr8g1306 686 Gene3D Phosphorylase Kinase; domain 1 331 443 - -
Mtr8g1306 686 MobiDBLite consensus disorder prediction 643 686 - -
Mtr8g1306 686 ProSiteProfiles Protein kinase domain profile. 368 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1306 686 MobiDBLite consensus disorder prediction 661 675 - -
Mtr8g1306 686 Pfam Salt stress response/antifungal 56 154 IPR002902 -
Mtr8g1306 686 Pfam Salt stress response/antifungal 185 265 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1306 Mtr-Chr8 16026891 16030825 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1306 31 686 Receptor kinase-like Gene Family AT4G05200 42.587 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr8g1306 PK_Tyr_Ser-Thr 3.5e-49 CL0016