Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1301 ATGACATGTACGAGGTTGGTTAGCTTCATGGCCTTGTTCCTTCTCCTCTTTGTCCTAATCACCTCAATTAGTGCACAAACACCAATTTATATGTACAATTTTTGCAACTCAACACAAAAATCTCTAAGCACTTCATACCAATCCAATGTTAACAACCTTCTTTTATGGTTCAACTCTGATTCTGCCACTGGAAAAGAATCTAACCACACCACCTTAGGAAACAATGATGATGCTGTTTACGGAAGCTATGATTGTCGTGGTGACATCGCGGATCAATTTTGTCGTTTTTGTATCAATAGTGCTATTAATGAAATTTCTCAACGTTGTCCTAATGGTGTGTCAGCTGTAATATGGTATGATATATGCATTATTCGTTACTCGAACCAAAATTACTTTGGAAAAGTTGTCGTAACACCGTCATGGAATATTACTGGCTCCAATAGCGTAAAGGACTCAACAGAAATTGGGAAAGCAGTAGATTTGATGAGGAGTTTGATGAGAAAGATGACAGAAGCGAACCAATCATGGGCAACGAGTGAGTTGAATTGGAGTGATACGGAGAAAAGGTACGGTTTGGTTCAGTGTTCTGGAGACCTTAACAATGATGGGTGCACAGAGTGTTTGGAGACATTGTTCGACAAAATTCATCTGTGTTGTGGGACTAAGGTAACATGGGCTCTTGTAGCTCCAAGTTGTGGGATTAGATTTGATGATCAATTGTTCTATCAGTTAACTGAGAATACAGGATCTTCTTCTCCTGTGCCAAATCCAGCCAAGAACGAAGGAGCAAGTAAGAGCAAAACCTTGATCATCACCTTATCAAGTGTACTCGTGGCAGTAGCTTTAGTATGTTTTTGTGTCTTCGTGAGATTAAGAAAAGGTGGATTGATATTCAAGAACATTCCTAATGCAATTCATGATCATGTTCAAAGAGATGATTCATTGGATGGAGACCTTCCAATAATCCCTTTAACAGTAATTCATCAGAGCACTAATTATTTTTCCGAGTCGTCTAAACTAGGGGAAGGTGGATTTGGCCCTGTTTACAAGGGTACTTTACCAGACGGGACAGAAATTGCGGTAAAAAGGCTTGCAGAAGCATCTAATCAAGGTTTAGAGGAGTTTAAGAATGAAGTAATATTCATAGCTAAATTGCAACACAGGAACCTTGTGAAGCTATTAGGTTGCTGCATTGAAGAAAATGAAAAGATATTAGTATATGAGTACATGCCAAATTCAAGTCTTGACTTTCATCTTTTCAATGAAGAAAAACATAAGCAACTAGATTGGAAATTACAACTAAGCATTGTAAATGGAATCGCAAGAGGACTACAATACCTGCATGAGGACTCTCGACTTAGAGTCATCCATCGAGATCTGAAAGCCAGCAACGTTCTTCTGGACAGTGAAATGAATCCAAAAATATCAGATTTTGGTTTGGCAAGAAAATTTGAAAGCGGACGAATTGAGACAAAAACAAAAAGAGTTGTTGGTACCTACGGATACATGGCTCCAGAATATGCTATGGTTGGAGTGTTTTCAGTTAAATCCGATGTTTATAGCTTTGGAGTTCTTATATTAGAAATCATTTATGGAAAAAGAAATGGTGAATTCTTTCTCTCCGACCATAGGCAAAGTCTTCTATTACATACATGGAGACTTTGGTGTGAAGGAAAATGCTTGGAAAAAATCCATCCAATCCACAAAGAATCATACATTGAAAGTGAAGTAATGAAATGCATACACATAGGTTTATTGTGTGTACAAGAAGATGCAGCAGATCGACCAACAATGTCCACCGTTGTTGTCATGCTAGGTAGTGACACAATAACCCTTCCAAATCCCAAGCCACCAGCATTTTCAGTGACAAGGGTTTCCGATGAAGAAGGTACAACTTCAAAAAGTTCTAAAGATAATTATGTTAATGAAGTACCAATAACTATCGTCTCCCCTAGATAG 1959 0.3818 MTCTRLVSFMALFLLLFVLITSISAQTPIYMYNFCNSTQKSLSTSYQSNVNNLLLWFNSDSATGKESNHTTLGNNDDAVYGSYDCRGDIADQFCRFCINSAINEISQRCPNGVSAVIWYDICIIRYSNQNYFGKVVVTPSWNITGSNSVKDSTEIGKAVDLMRSLMRKMTEANQSWATSELNWSDTEKRYGLVQCSGDLNNDGCTECLETLFDKIHLCCGTKVTWALVAPSCGIRFDDQLFYQLTENTGSSSPVPNPAKNEGASKSKTLIITLSSVLVAVALVCFCVFVRLRKGGLIFKNIPNAIHDHVQRDDSLDGDLPIIPLTVIHQSTNYFSESSKLGEGGFGPVYKGTLPDGTEIAVKRLAEASNQGLEEFKNEVIFIAKLQHRNLVKLLGCCIEENEKILVYEYMPNSSLDFHLFNEEKHKQLDWKLQLSIVNGIARGLQYLHEDSRLRVIHRDLKASNVLLDSEMNPKISDFGLARKFESGRIETKTKRVVGTYGYMAPEYAMVGVFSVKSDVYSFGVLILEIIYGKRNGEFFLSDHRQSLLLHTWRLWCEGKCLEKIHPIHKESYIESEVMKCIHIGLLCVQEDAADRPTMSTVVVMLGSDTITLPNPKPPAFSVTRVSDEEGTTSKSSKDNYVNEVPITIVSPR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1301 652 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Mtr8g1301 652 Gene3D Transferase(Phosphotransferase) domain 1 410 611 - -
Mtr8g1301 652 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Mtr8g1301 652 Gene3D Phosphorylase Kinase; domain 1 302 409 - -
Mtr8g1301 652 Pfam Protein tyrosine and serine/threonine kinase 337 604 IPR001245 GO:0004672|GO:0006468
Mtr8g1301 652 PANTHER PROTEIN KINASE DOMAIN 20 650 - -
Mtr8g1301 652 ProSiteProfiles Protein kinase domain profile. 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1301 652 SMART serkin_6 334 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1301 652 CDD STKc_IRAK 340 605 - -
Mtr8g1301 652 Pfam Salt stress response/antifungal 35 129 IPR002902 -
Mtr8g1301 652 Pfam Salt stress response/antifungal 160 238 IPR002902 -
Mtr8g1301 652 SUPERFAMILY Protein kinase-like (PK-like) 319 605 IPR011009 -
Mtr8g1301 652 Pfam Domain of unknown function (DUF3403) 607 652 IPR021820 GO:0004674
Mtr8g1301 652 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 650 - -
Mtr8g1301 652 Gene3D - 140 241 IPR038408 -
Mtr8g1301 652 Gene3D - 27 131 IPR038408 -
Mtr8g1301 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1301 Mtr-Chr8 15949161 15953028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1301 8 652 Receptor kinase-like Gene Family AT4G05200 40.296 2.38e-175 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr8g1301 PK_Tyr_Ser-Thr 3.4e-50 CL0016