Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1294 ATGTCTCCATCAATGAAATCAAAATCCAAGTCGAAGGCGAAGGCTGCAAAGGAACAACAAAAGACTTCTCCAAAGACTTCCGGATCTACTAATGATGAGAGCAGCATTCCTTCTAGTGCGTGCGATCTCGAAACATCATTGGTTGATTCTTCATCCATAGTTAATGACAACAGCCAATTCGCAAAAATAAATGAAACAGATGATCATTCTATTAGTCCTCAAGGAACGGTATCTGAGTATGATTCAGTTTCTAATAACGGCAGTTGTTCTGGTGAATCGGAAGACACTAAAGAGAAAGCTGCAAACTCGTCTACTCGGTTGGAATTTATACCTGGTTGTGATAACGACAGAAGGGATAAGATCCGACTGAAGAATGAGAGGAAGCACCAGAGACAGAGGGAAAGGAGAGCTCATGAGTTGCACGAGCGATGTGTTGCGTATCTAATGTCGAGAAAGCTAGAAAAACTTGTGCAGAAGTTAGTGGCGATGGGATTCACTACCGAGCGAGCAACATTGGCTTTGAAGTTAAACAACGGAAAATTAGAAGAATCGATATCGTGGCTATTTGAAGGAGGAAGTGAAGCGAAAGATACTACCAACCTTGTAAGTGATGGTAATTTGAAGATCGACATAAGTGAAGCGCTTGAACAAATTTATGCTCTGGAAGTAAAGTACAATTGTTCAAAGCAAGAAGTCGAAAGAGCAGTTGTTGCCTGTGAAGGTGATCTTCAAAAGGCAGAAAACACGTTAAAATCTCAGAAGGAAGAATCTCATGTGAATCAGTCAGAAGATTCTGCTCAAAATAATAATAGTTCGATTAGATCTCATGGATTACAACCAGCGTCAGTATCAATACAGCAGAGAGGGAATGAAAGTGATTTCAACTATTACAATGTACGTGGTGCTGATTCTATGTTCCATGATCCTGAAAATAGGAATCCACAGTCTCTACACTTGAATCATCAAAATGAACTGACACAGAAAAGATGGGGTGTTGGTGCTACAGCATCAAATCCTTCAAATATGTTACAATCCATGCAAGCAATGTCACCGTATGTTAAAATGGAGGTGCAGCCGAGTGCCTTTAGGAACGACGGAAGAATGATTCATCAAGGCGTAGGAAGGGAACCGGTAGTCATGATGCAGCATCCACAATTCGCCGATGCCAAACAAAATTATCTGAATTCTATGAATTCCATAGCTTCCGGAACATCTAGTTGGTATGTAAATAATGTTCCGTCGTACGAAAATACAAGGTCGAATGGGAATTTACTACTACAAAATCATGGCATGGGAAATGTTGGCGCAGATCGCCTGCAGCAACTTTCTCAAGCTCCGTATAAAGAATATTCCCATGTATTTGGGCAGGCAGATTCTTCAATCTCATCAGGTGGAATGGGAGGTTTCTATAAACCGATGGTTGCATCGTCGCCTTCACCTACAATGCCTTCTCAGTCTCACCCTCAACATCATGGCTCACGGAACACCACCGCATCTTCGCCTGCACTTACAGTTCCACCTTCCCTTGGGCTCTTTTGCGGTCATCAGAATCCATCCGCCAGATCATTCAGCTCACATTCACATGTGGATTGGAATACGGGGGGCATGGTGCAAGAATTTGACTACAACAATATAGATTGGAGTTTAGATTGCCCACCGTCATCCAGATCAGGTGATGTATGGCTAGGATTCTCATCGTCATTGAGAAACAACGCCGGGAATAGGATGGCCAGTTCTTATATGACTGGATCTCGAAACGTTGGCACGGCGAGGGAAATTTCATCGTCTGCTGGATTGCGAGATTGGACCTCACCTTTTGCTGGGAAGGACATATTCAGTGCTCCCAGAAAGTTTGTTACCTTTCCTCCTATGTAG 1875 0.4283 MSPSMKSKSKSKAKAAKEQQKTSPKTSGSTNDESSIPSSACDLETSLVDSSSIVNDNSQFAKINETDDHSISPQGTVSEYDSVSNNGSCSGESEDTKEKAANSSTRLEFIPGCDNDRRDKIRLKNERKHQRQRERRAHELHERCVAYLMSRKLEKLVQKLVAMGFTTERATLALKLNNGKLEESISWLFEGGSEAKDTTNLVSDGNLKIDISEALEQIYALEVKYNCSKQEVERAVVACEGDLQKAENTLKSQKEESHVNQSEDSAQNNNSSIRSHGLQPASVSIQQRGNESDFNYYNVRGADSMFHDPENRNPQSLHLNHQNELTQKRWGVGATASNPSNMLQSMQAMSPYVKMEVQPSAFRNDGRMIHQGVGREPVVMMQHPQFADAKQNYLNSMNSIASGTSSWYVNNVPSYENTRSNGNLLLQNHGMGNVGADRLQQLSQAPYKEYSHVFGQADSSISSGGMGGFYKPMVASSPSPTMPSQSHPQHHGSRNTTASSPALTVPPSLGLFCGHQNPSARSFSSHSHVDWNTGGMVQEFDYNNIDWSLDCPPSSRSGDVWLGFSSSLRNNAGNRMASSYMTGSRNVGTAREISSSAGLRDWTSPFAGKDIFSAPRKFVTFPPM* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1294 624 PANTHER DOMAIN PROTEIN, PUTATIVE-RELATED 1 624 - -
Mtr8g1294 624 Gene3D - 116 203 - -
Mtr8g1294 624 MobiDBLite consensus disorder prediction 59 111 - -
Mtr8g1294 624 MobiDBLite consensus disorder prediction 248 285 - -
Mtr8g1294 624 MobiDBLite consensus disorder prediction 1 43 - -
Mtr8g1294 624 MobiDBLite consensus disorder prediction 473 501 - -
Mtr8g1294 624 Coils Coil 229 263 - -
Mtr8g1294 624 PANTHER UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B PROTEIN 1 624 - -
Mtr8g1294 624 MobiDBLite consensus disorder prediction 262 285 - -
Mtr8g1294 624 SUPERFAMILY UBA-like 154 196 IPR009060 GO:0005515
Mtr8g1294 624 MobiDBLite consensus disorder prediction 477 501 - -
Mtr8g1294 624 MobiDBLite consensus disorder prediction 59 91 - -
Mtr8g1294 624 MobiDBLite consensus disorder prediction 20 43 - -
Mtr8g1294 624 SMART uba_6 211 252 IPR015940 -
Mtr8g1294 624 SMART uba_6 153 190 IPR015940 -
Mtr8g1294 624 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 151 191 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1294 Mtr-Chr8 15895577 15898503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1294 1 321 EF-hand Containing Proteins AT5G12120 44.669 9.78e-71 238