Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1291 ATGAAGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAAATAATGCAAGCTGATGAAGATGTTGGAAAGATAGCATTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTGGAGCTATTTCTGCAAGACCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGGGCGAAAACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTATTTGACTTTCTGAAGGATGTAGTCAGCAAGGTTCCTGACTACGGCCATGGTCATGGCCATACTGATGCTGGTGGTGCTGATGATCAGACCATTCCTAAAAGAAGGAAAGCTGCAGGTGATGATGGTAATGACAGTGATGAAGAAGCTAAGAGGGGCAAGATGCTTGAGTTGGGCCACACTAGCCCTACTGGCAGGGGAAGAGGCCGAGGTAGAGGAAGAGGACGAGGTCGAGGTCGAGGACGAGCTATTCAAAGAGAGGGACATCATCAGGAGACTGAGTCTGAGCCTTGTCCTTCTGTTCAGCAAGTTAGCCAAAATACTACAGATACAAATGTGGCTATACTTGATGGCACAGAGTCAAACGAGTTACCAAAGAATAATGTTGTTGTTCTTCCTGCTGATAACTCTGACTCACTCCTTAATATTGATCTGAATGCCAATATGAACGAAAATGATGACAAAAAGGCTAGCACAGTTGCTAATCTCACAGTCACTATTCCCGAAGCCGCTAATCCTGAAGCTGCCAATCCCCCTGTGTCTGAACCTCCTCCACCAGACAGCAGTCATCATGAAGAAATTCCGGGCTGGTCCCTTTCTGAGGTGGACAAGATGGCCATTGATTCGATGCAGCTTGCCCAGCTTGGTACACGAATGGATGAAGATGATGAAGATTATGACGAGGAAGGGTAA 918 0.4521 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLKDVVSKVPDYGHGHGHTDAGGADDQTIPKRRKAAGDDGNDSDEEAKRGKMLELGHTSPTGRGRGRGRGRGRGRGRGRAIQREGHHQETESEPCPSVQQVSQNTTDTNVAILDGTESNELPKNNVVVLPADNSDSLLNIDLNANMNENDDKKASTVANLTVTIPEAANPEAANPPVSEPPPPDSSHHEEIPGWSLSEVDKMAIDSMQLAQLGTRMDEDDEDYDEEG* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1291 305 MobiDBLite consensus disorder prediction 244 305 - -
Mtr8g1291 305 SUPERFAMILY Histone-fold 3 90 IPR009072 GO:0046982
Mtr8g1291 305 PANTHER HISTONE SUPERFAMILY PROTEIN 1 304 - -
Mtr8g1291 305 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Mtr8g1291 305 MobiDBLite consensus disorder prediction 155 169 - -
Mtr8g1291 305 MobiDBLite consensus disorder prediction 91 131 - -
Mtr8g1291 305 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Mtr8g1291 305 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 304 - -
Mtr8g1291 305 MobiDBLite consensus disorder prediction 91 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1291 Mtr-Chr8 15818849 15822764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1291 1 294 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.052 3.96e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mtr8g1291 CBFD_NFYB_HMF 2.4e-19 CL0012