Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1245 ATGGGAAGTAGAATCAGAGTTGGTGTTGAAGATGAGAAGGGAGCAGAAAGAGGGATGCCGAGCTTCAATTCCGACGATGCATGCTATACAGATGGGAACACAATTGATAATTTTCATGTTTCTGACTTTGGAGCATTTGGTCAACCATATCGCTTAGAGGATGCTGTTGCTCTGAGTGGAAATTCAAACTCGGTTTTTAACTCACTTAAAGTAAGTGGCCAAACAATTTCTCCTGCCCCTGTTCACACCAGTTCTCTTGATAAGTTGCCAACATCACGTGATAAAAGCCCATTGACGAACCAAACAGAGCCACATAGGTTGCAATTAACAAAGCTTCAATCATCAAATCCAGGTAGCGGTGCCATATTAAGTGTTCATACAGAAAACCAGGAAGAGTTTGCCATGGCCGATGCCAGTCCTCGGACTGATATTTCGACGGATGGTGACACCGATGACAAGAATCAGCGGTTTGATAGAAATCAATCCCTTGCTGTTGCGGGTTCCGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGACTCTCCGCAGGCTCGCTCAGAATCGTGAGGCGGCAAGGAAAAGCCGGTTGAGAAAGAAAGCCTATGTCCAACAATTGGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCCAGGCAACAGGGAGTCTTCATATCAAGCTCGGGTGAACAAACACATTCACTGAGTGGAAATGGAGCAATGCAATTCGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTGAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATAGTGGCACATTACGATGAGATTTTTAGGCTGAAAGGCGTTGCAGCTAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCTGCTGAAAGGTGTTTCTTATGGCTTGGTGGTTTTCGGTCGTCTGAACTTCTCAAGCTTCTGGTAAATCAACTGGAACCTCTCACTGAGCAGCAGTTGATGGGTATTACCAACTTGCAACAATCCTCCCAACAAGCAGAAGATGCATTGTCTCAGGGTATGGAAGCATTACAACAGTCCCTTGCAGAGACGTTGTCCACTGGTGCACCTTCCTCGTCTGGTTCCTCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTTGGAACACTCGAGGGCTTCATTCGACAGGCTGACAATCTGCGCCAGCAGACACTACAACAAATGCACCGGATATTGACAACACGACAATCGGCTCGTGCACTCCTTGCCATCCATGATTACTTTTCGCGGCTGCGCGCTCTCAGCTCTCTCTGGTTGGCTCGTCCAAGAGATTAA 1401 0.4632 MGSRIRVGVEDEKGAERGMPSFNSDDACYTDGNTIDNFHVSDFGAFGQPYRLEDAVALSGNSNSVFNSLKVSGQTISPAPVHTSSLDKLPTSRDKSPLTNQTEPHRLQLTKLQSSNPGSGAILSVHTENQEEFAMADASPRTDISTDGDTDDKNQRFDRNQSLAVAGSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGEQTHSLSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGIVAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPSSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1245 466 Pfam Seed dormancy control 263 338 IPR025422 GO:0006351|GO:0043565
Mtr8g1245 466 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Mtr8g1245 466 Pfam Basic region leucine zipper 177 223 IPR004827 GO:0003700|GO:0006355
Mtr8g1245 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Mtr8g1245 466 MobiDBLite consensus disorder prediction 144 158 - -
Mtr8g1245 466 MobiDBLite consensus disorder prediction 1 23 - -
Mtr8g1245 466 Gene3D - 180 229 - -
Mtr8g1245 466 SMART brlzneu 177 240 IPR004827 GO:0003700|GO:0006355
Mtr8g1245 466 CDD bZIP_HBP1b-like 181 233 - -
Mtr8g1245 466 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 58 466 - -
Mtr8g1245 466 MobiDBLite consensus disorder prediction 1 19 - -
Mtr8g1245 466 PANTHER TRANSCRIPTION FACTOR TGA9 58 466 - -
Mtr8g1245 466 MobiDBLite consensus disorder prediction 75 126 - -
Mtr8g1245 466 Coils Coil 257 277 - -
Mtr8g1245 466 MobiDBLite consensus disorder prediction 75 183 - -
Mtr8g1245 466 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Mtr8g1245 466 ProSiteProfiles DOG1 domain profile. 246 463 IPR025422 GO:0006351|GO:0043565
Mtr8g1245 466 Coils Coil 200 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1245 Mtr-Chr8 15299564 15306896 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr8g1245 DOG1 5.7e-33 No_clan