Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1212 ATGGAAGATAATGCCACTACATCCCTTTTGGATGGGAAGGTTGTTGGGATCCGCTTCAGTATGGCTACACGCCATGAAATTAGTACTGCATCAATTAGTGATTCCCAAATTAGCCATGCGAGTCAACTGGCTAATCCTTTCCTTGGGCTTCCACTTGAGTTTGGACGGTGTGAATCTTGTGGCACTTCCGAAGCAGGAAAATGCGAAGGCCACTTTGGATATATTGAACTTCCAGTTCCTATTTATCATCCTAGCCATGTTACTGAGTTGAAGAAAATACTGAGCCTGGTCTGCTTAAGCTGCTTGCGATTGAAGAAAACCAAGGTACCTTCTTCAAGCAGTGGCTTGGCACAGAGATTATTATCTCCTTGCTGTGAGGATGTTAATGCTGCACAAGTTTCTATTCGGGAGGTCAAAACAGCTGATGGGGCTTGTTACTTGGCACTAAAGGTGTCAAAGTCAAAGATGCATGACGGATTTTGGACCTTTCTAGAAAAATATGGCTATCGCTATGGGGGAGATCATACTCGAGCTTTGCTTCCTTGTGAGGCAATGGAAATTATCAAGAGACTTCCTCAAGAAACAAAGAAGAAACTTGCTGGAAAGGGATATTTTCCTCAAGATGGATATATTTTAAAATACCTTCCTGTACCACCAAATTGCCTGTCTGTGCCAGTAGTTTCAGATGGTGTCAGTATCATGTCTTCGGATCCGGCCTTGACAATTCTCAGAAAATTGCTTAGGAAGGTTGAAGTCATCAGAAGTTCAAGATCTGGTGAACCAAACTTTGAGTCTCATCAAGTGGAAGCCAACGACTTGCAATCCGTGGTCGATCAGTATCTTCAAATCAGGGGAACTTCTAAGGCCGCACGTGATATTGAAACACACTACGGGGTTAACAAAGAGCTGAATGATTCCTCAACAAAAGCGTGGTTGGAAAAAATGAGGACGTTGTTTATCAGAAAGGGTTCCGGGTTTTCTTCCCGGAATGTGATCACTGGAGATGGGTATAAGAAAATAAATGAAGTTGGAATTCCGCTTGAGGTTGCCCAAAGGATCACATTTGAGGAAAGAGTCAGCATTCATAACATCCACTATTTACAGAAGTTGGTGGATGAAAACTTGTGCTTGACATACAAGGAAGGTATGTCAACCTACTCACTGAGGGAGGGCTCAAAGGGGCACACTTATCTTAAACCTGGTCAGATAGTGCACCGGAGGATTATGGACGGGGATACTGTTTTCATAAACAGACCGCCAACCACCCACAAGCACTCCTTGCAAGCACTTGTGGTATACATCCATGATGACCACACTGTCAAAATTAATCCACTAATATGTGGACCACTAGGGGCGGATTTTGATGGTGACTGTGTCCATTTGTTTTATCCCCAGTCACTCGCTGCTAAAGCCGAGGTTTTGGAGCTTTTCTCTGTAGAGAAACAACTTCTCAGCTCTCATAGTGGTAATCTTAACCTTCAGTTATCCGCAGATTCATTATTGTCACTCAAGATGCTCGTCAAGAGTTGTTTTTTGGATAGAGTAGCAGCAAATCAAATGGCAATGTTTCTTTTACTGCCTTTGCCAATGCCTGCTTTACTCAAGGCCACTACCGGTGATTCTTATTGGACATCTATACAGATTTTGCAGTGTGCTTTGCCTTTCTCGTTTGATTGTACTGGAGGACGATACTTGATCAGGCAGAGGGAAATCTTAGAATTTGATTTTACCAGAGATATTTTACCTTCAATTATAAATGAAATAGCTGCCTCAATTTTTTTTAGTAAGGGTCCTCAGGAGGCACTCAATTTCTTTGATGTGATACAACCCTTTCTGATGGAAAATATATTTGCCCATGGATTTAGTGTGGGATTACAAGACTTTTCAATATCCAGGGCAGTGAAAAGGGTTATAAATAGGAGCATTGGGAAAGTTTCACCTTTGTTGCGTCAGCTGAGGGGAATGTACAAAGAACTGGTGGCTCAACAATTGGAGAAAGTCATTCAAGATATTGAACTTCCGGTTATAAATTTTGCTTTGAAGTCAACCAAACTTGGAGATTTGATTGACTCAAAGAGTAAGTCGGCTGTTGACAAGGTAATTCAACAAATTGGCTTTTTAGGCCAACAACTCTTTGAGAGAGGAAAGTTTTATTCCAAGGGATTGGTTGAGGATGTAGCTTCTCATTTTCAATTGAAGTGTTTCTATGACAAGGATGATTATCCCTCTGCTGAGTTTGGTTTGCTCAAAGGATGCTTCTTTCATGGTTTAGATCCATATGAAGAGTTGGTGCATTCCATTGCAACGAGAGAAATAATTGACCGCTCTTCTAGAGGATTATCTGAACCAGGCACACTATTCAAGAACTTGATGGCCATTCTCCGTGATGTTGTTATTTGCTATGATGGAACTGTGAGGAATGTATGTAGTAATTCCATCATCCAGTTTGAATATGGCATACAATCTGGAGATGCAGCCCAGCACTTATTCCCTGCTGGTGAGCCTGTAGGTGTCTTAGCTGCAACTTCCATGTCAAACCCTGCTTATAAAGCAGTCCTTGATGCTAGTCCAAGCAGCAATTCTTCCTGGGGGTTTATGAAGGAAATACTCCTTTGCAAGGTGAACTTCAGGAATGAACCAAATGACCGTCGTGTAATTTTATATTTAAATGATTGTGATTGTGGGAGGAATTATTGTCGTGAAAATGCTGCATATTTGGTTCAAAATCAATTGAGAAAAGTAAGCCTCAAGGATGCCGCACTAGATTTCATTGTTGAATACCAGCAGCAGCGAAGACGCAGAGATGGTACTGAAGATGCAGGCCTTGTTTGTCACATTCGTCTTAAAGAGGTGAAGTTAGAGGAATTGAAGATCAATATGACTGAAGTTTACCAAAAATGCCAAGAGAAACTTAATTCCTTTAGTCGGAAGAAGAAACTTTCCCCATTTTTTAAGAGAACTGAATTAATTTTCAGTGAGTTTTGCTCTGCTCCTTGTGTAACATTCCTTTGGCCGGATGGTGTTGATTTAGACCAAACGACTAAAGTCCTGGCTGACATGATCTGCCCAGTTCTGTTAGAAACAATCATACAAGGAGACCCTCGTATCAGTTCCGCAAGTATAATTTGGGTTAATCCTGGCACGAACACATGGGTTCGTAACCCGTCCAAATCTTCTAATGGTGAATTAGCACTGGACGTCATTCTTGAGAAAGAAGCTGTTAAACAAAGTGGCGATGCTTGGAGGATTGTACTCGATTCCTGCCTTCCTGTTCTTCATTTGATTGATACTAGACGTTCTATCCCTTATGCTATTAAGCAAATTCAGGAATTACTGGGCATTGCATGCACTTTTGATCAAGCGATTCAGCGTCTTGCAGCATCAGTTAGAATGGTGGCAAAAGGCGTTCTCAGAGAGCATCTCATTCTCTTAGCAAGTAGTATGACTTGTGGTGGAAATTTGGTTGGTTTTAATACAGGTGGTTATAAAACACTGGCTCGTCAATTAGACATTCAAGTACCATTCACCGATGCAACACTCTTTACTCCTCGAAAATGCTTTGAAAGAGCTGCTGAGAAACACCACTCAGACTCTTTGTCAAGCATTGTTGCCTCTTGTTCCTGGGGTAAGCACGTGGCGGTTGGTACAGGATCAAAATTTGATATTGTATGGGATCCGAAAGAGATAAAAACAAATGAAATTGAAGGGATGAATGTTTACAAATTTCTCAATATGGTCAAAGGCCTTGCCAACGGGGAAGAAGAAACCAATGCTTGTTTGGGTGAGGACATCGATGATCTGTTTGACGATGAAAATGGGGACTTTGACATGTCCCCACAGCATGCCTCTGGATTTGATGCTGTCTTTGATGAGACTTTTGAACTTCCGAATGGCTCAACATCAAATGGTTGGGATTCAAATAAAGACCAGATTGATCAGCCCAATACAAACTCAAATGATTGGTCTGGTTGGGGACCAAATAAATCTGACTTACAAGTTGATGTTATCCAAGAAGACTCTTCTAAGTCTAGTGCTTGGGGGGCTGCAACAAATCAAAAGAGTGACCAGTCTGCTTCTGCTTGGGGTAAAGCTGTGGTGCAAGAAGACTCTTCAAAGTCCGGTGCTTGGGGGACTGCCACAAATCAAAATAGTCAGCAGCCTTCTTGGGGGGCTGCAACAAATCAAAAGAGTGACCAGTCTGCTTCTGCTTGGGGTAAAGCTGTGGTGCAAGAAGACTCTTCAAAGTCCGGTGCTTGGGGGACTGCCACAAATCAAAATAGTGAGCAGCCTTCTTGGGGGGCTGCAACAAATCAAAAAAGTGACCAGTCTGCTTCTGCTTGGGGTAAAGCTGTGGTGCAAGAAGACTTTTCAAAGTCTGGTGCTTGGGGGACTGCCACTAATCAAAATAGTGAGCAGCCTTCTTGGGGGGCTGCAACAAATCAAAAGAGTGACCAGTCTGCTTCTGCTTGGGGTAAAGCTGTGGTGCAAGAAGACTCTTCAAAGTCTGGTGCTTGGGGGACTGCCACTAATCAAAATAGTGAGCAGCCTTCTTGGGGGCTGCAACAAATCAAAAGAGTGACCAGTCTGCTTCTGCTTGGGGTAAAGCTGTGGTGCAAGAAGACTCTTCAAAGTCCGGTGCTTGGGGGACTGCCACTAATCAAAATAGTGAGCAGCCTTCTTGGGGGGCTGCAACAAATCAAAAGAGTGACCAGTCTGCTTCTGCTTGGGGTAAAGCTGTGGTGCAAGAAGACTCTTCAAAGTCCGGTGCTTGGGGTAATGCGAAATCTGTGGTACAAGAAGACTCTTCAAAGTCTGGTGCTCCGGCCAACACAAATCATAGTAGTGATCAGTCCTGTTGGGGACAAATAAGGTGGAGAGGAAAGAGCCCAAGGAGAATCTGGTGGCACTAAAAAATGGAAAGCTGATGTTAGCCAAGAAGACTCGACAAACTCAGGTGGTTGGAAAGCTTGGGGAAGCAGTAAACCTGAAGTACATGAGGGTGAGTCTACAAAAGTACAAGATTCTTGGAACTCTCAGAAATGGAAAGCTGGAGAGGATGTTACCCAAAAAGACTCTCAGAAGTCTAGTGCTTGGGGTGCAACAAAACTGAAGTCAAATGATATCCAAGAAGACTCGACAAACTCAGGTGGTTGGAAAGCTTGGGGAAGCAGTAAACCTGAAGTACATGAGGGTGAGTCTACAAAAGTACAAGATTCTTGGAACTCTCAGAAATGGAAAGCTGCAGAGGATGTTAGCCAAAAAGACTCGCAGAAGTCTAGTGCTTGGGGTGCAACAAAACCGAAGTCAAATGATAATAGGTCCTCGTGGGGACAGAAAAAAGATGAAATACATGTTATGCCAGAAGATTCTTCTAGATCTAATGCCTGGGAACAGAAGCCGGAAAATGTAAAGGACAGTTGGGTTGCCAAAGTGCCGGTTGCCAATAGCTCTTGGGGTAAGGCTAAATCACCAGAAAACCGACCTTGGGATTCGAAGAACGAGCCAAACAACTCTTTTGGAAAACCCAATTCACAAGAAAACGAGCCTTGGGATTCCAAGAATGAGTCGGATAGCTCCTGGGGGAAACCAAAATCACAAGAAAGCCAACCTTGGGATTCCAAGAACGAGTCAAATAGCTCTTGGGGAAAACCCAAATCGCAAGAAAACCATCCTTGGGATTCTAAGAATGAGTCAAATCAAACTGCAGGTTCTCGTGGATGGGACTCTCAAGTTGCCTCTGCTAACTCTGAAAGCGACAAAAGTTTTCAATGGGGAAAACAAGGACGAGATTCATTTAAGAAAAATCGATTCGAAGGTTCGCAAAGTGGGGGTCCAAATGCTGGGGACTGGAAAAACAGGAGTCGCCCTGTCAGACCACCTGGACAGAGGTTTGAATTATACACTCCTGAAGAGCAAGATATCATGAAGGATATTGAACCTATTGTCCAGTCAATCAGAAGAATCATGCAACTACAAGGGTACAATGATGGGGATCCGCTAGCTAACGAAGACCAAAAGTATGTGCTCGAGAATGTTTTCGAGCATCATCCGGATAAAGAAACAAAAATGGGTGTTGGAGTTGATCATGTCATGGTCAGCAAACACAGCAATTTTCAAGACAGCAGATGCTTGTATGTGGTTTTAAAAGATGGTAAAAAGGAAGACTTTTCGTACCGCAAGTGCCTGGAAAACTTGGTGAGGAAGAAATATCCGGAGACTGCTGAATCATTCTGCGGCAAATATTTCAGGAAACCGCAACCCCGTGTAAAGAGGGACCAGACTCCAAATCCAGCAGGGGAGCAGACTGCAGCTCCAAATCCAGCAGGGGAGCAGACTGCAGCTCCAAACCCAGCAGGGGAGCAGACTGCAACTCAAAATCCACCAGGGGAGCAGACTTCAACTCCAAATCCAGCAGAGGAGCAGACCCCTACACCAGCCGGGGATCAGACATCAACTCCAGTGCCGATGGAAACCAATTAG 6480 0.4353 MEDNATTSLLDGKVVGIRFSMATRHEISTASISDSQISHASQLANPFLGLPLEFGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVTELKKILSLVCLSCLRLKKTKVPSSSSGLAQRLLSPCCEDVNAAQVSIREVKTADGACYLALKVSKSKMHDGFWTFLEKYGYRYGGDHTRALLPCEAMEIIKRLPQETKKKLAGKGYFPQDGYILKYLPVPPNCLSVPVVSDGVSIMSSDPALTILRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGTSKAARDIETHYGVNKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERVSIHNIHYLQKLVDENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHRRIMDGDTVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSADSLLSLKMLVKSCFLDRVAANQMAMFLLLPLPMPALLKATTGDSYWTSIQILQCALPFSFDCTGGRYLIRQREILEFDFTRDILPSIINEIAASIFFSKGPQEALNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRGMYKELVAQQLEKVIQDIELPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSKGLVEDVASHFQLKCFYDKDDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPAYKAVLDASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQNQLRKVSLKDAALDFIVEYQQQRRRRDGTEDAGLVCHIRLKEVKLEELKINMTEVYQKCQEKLNSFSRKKKLSPFFKRTELIFSEFCSAPCVTFLWPDGVDLDQTTKVLADMICPVLLETIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLAASVRMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFTPRKCFERAAEKHHSDSLSSIVASCSWGKHVAVGTGSKFDIVWDPKEIKTNEIEGMNVYKFLNMVKGLANGEEETNACLGEDIDDLFDDENGDFDMSPQHASGFDAVFDETFELPNGSTSNGWDSNKDQIDQPNTNSNDWSGWGPNKSDLQVDVIQEDSSKSSAWGAATNQKSDQSASAWGKAVVQEDSSKSGAWGTATNQNSQQPSWGAATNQKSDQSASAWGKAVVQEDSSKSGAWGTATNQNSEQPSWGAATNQKSDQSASAWGKAVVQEDFSKSGAWGTATNQNSEQPSWGAATNQKSDQSASAWGKAVVQEDSSKSGAWGTATNQNSEQPSWGLQQIKRVTSLLLLGVKLWCKKTLQSPVLGGLPLIKIVSSLLGGLQQIKRVTSLLLLGVKLWCKKTLQSPVLGVMRNLWYKKTLQSLVLRPTQIIVVISPVGDK*GGEERAQGESGGTKKWKADVSQEDSTNSGGWKAWGSSKPEVHEGESTKVQDSWNSQKWKAGEDVTQKDSQKSSAWGATKLKSNDIQEDSTNSGGWKAWGSSKPEVHEGESTKVQDSWNSQKWKAAEDVSQKDSQKSSAWGATKPKSNDNRSSWGQKKDEIHVMPEDSSRSNAWEQKPENVKDSWVAKVPVANSSWGKAKSPENRPWDSKNEPNNSFGKPNSQENEPWDSKNESDSSWGKPKSQESQPWDSKNESNSSWGKPKSQENHPWDSKNESNQTAGSRGWDSQVASANSESDKSFQWGKQGRDSFKKNRFEGSQSGGPNAGDWKNRSRPVRPPGQRFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRKPQPRVKRDQTPNPAGEQTAAPNPAGEQTAAPNPAGEQTATQNPPGEQTSTPNPAEEQTPTPAGDQTSTPVPMETN* 2160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1621 1965 - -
Mtr8g1212 2158 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 197 1375 - -
Mtr8g1212 2158 Pfam Protein of unknown function (DUF3223) 1990 2061 - -
Mtr8g1212 2158 Gene3D RNA polymerase ii 354 406 - -
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 2083 2158 - -
Mtr8g1212 2158 Gene3D RNA polymerase Rpb1, domain 3 487 622 IPR042102 -
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 2094 2158 - -
Mtr8g1212 2158 Gene3D - 1975 2067 - -
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1624 1643 - -
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1689 1719 - -
Mtr8g1212 2158 Gene3D - 322 486 - -
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1860 1921 - -
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1772 1798 - -
Mtr8g1212 2158 Gene3D RNA polymerase II, clamp domain 8 121 IPR044893 -
Mtr8g1212 2158 Pfam RNA polymerase Rpb1, domain 3 482 627 IPR007066 GO:0003677|GO:0003899|GO:0006351
Mtr8g1212 2158 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 13 1227 - -
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1753 1771 - -
Mtr8g1212 2158 Pfam RNA polymerase Rpb1, domain 5 756 1164 IPR007081 GO:0003677|GO:0003899|GO:0006351
Mtr8g1212 2158 Gene3D - 796 836 - -
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1829 1846 - -
Mtr8g1212 2158 Pfam RNA polymerase Rpb1, domain 1 37 281 IPR007080 GO:0003677|GO:0003899|GO:0006351
Mtr8g1212 2158 PANTHER DNA-DIRECTED RNA POLYMERASE 197 1375 IPR045867 GO:0003899|GO:0006351
Mtr8g1212 2158 Pfam RNA polymerase Rpb1, domain 2 325 479 IPR000722 GO:0003677|GO:0003899|GO:0006351
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1296 1326 - -
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1296 1493 - -
Mtr8g1212 2158 SMART rpolaneu7 208 507 IPR006592 GO:0003677|GO:0003899|GO:0006351
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1333 1447 - -
Mtr8g1212 2158 MobiDBLite consensus disorder prediction 1459 1493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1212 Mtr-Chr8 14824888 14844022 Dispersed