Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1196 ATGTCCTCAAAGCATGAAAGTCCTGATAAGAAAGATGTATCAGGTACACACAAAAGGCTATCAAATCTGATGCACCAAGCTGGAAACAGGTATTGTGCCGATTGCGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCCGGCATACATAGAAGTTTAGGAGTCCACATATCAAAGATTGCATCATTGAAGCTAGATCAATGGTCAGATGAACAAGTTGATGCATTAGAGAAGTTGGGTGGAAATACATTCTTAAATAAAAAATATGAAGCTTGCTTACCAAGTAATATAAAAAAACCAAAACCACATACCTCGATCGAAGAGCGCTCCGAATATATCAGGAAAAAATATGAGGAACTACAGTTTATGATGGAGAGTGATGAGAATTCATTATGTCCATTTGTACCATCTCAAGGAAGAAGTGTATCATTAGGTCCGAGTAGTTCTTCATGTTACACTTATCATATTGACAACAAAAAATATGAAAAAGCGCTGACAAGACATCATATCGGACACGCATTCCGAAAGAGCTGGACAAGAAAAGATTCTGAGCACAAGTGTTCAAAGAAGAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTTAGGAAAGGCACTCACCTAGCTATTAGAGATGTAGTGACCAGTGACCCTTATGTCATCCTTTCTTTGGGACACCAATCGGTAAAAACACGCGTTATAAGGAACAATTTGAATCCAGTTTGGAATGAAAGTCTAATGCTATCAATTCCAGAGAACATTCCTCCCCTTAAAGTGCTTGTATATGATAAGGATACATTTTCAACTGATGATTTTATGGGCGAAGCTGAAATAGACATTCAACCACTAGTTTTAGCTGCAATTGCATACGAGAAATCTACGGCCAACGAGTCCGTGCAGCTAGAGAAATTTGTAGAAAGCAGGGACAACACTCTTGTTAGAGATGGTGTCATATCTCTTGAGGATGGGAAGATCAAACAAGAAATCTCAGTGAGACTACAGAATGTTGAGAGAGGTGTTCTTGAGATTGAGCTTGAGTGTGTTCCTCTAATTCAATAG 1104 0.3868 MSSKHESPDKKDVSGTHKRLSNLMHQAGNRYCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKIASLKLDQWSDEQVDALEKLGGNTFLNKKYEACLPSNIKKPKPHTSIEERSEYIRKKYEELQFMMESDENSLCPFVPSQGRSVSLGPSSSSCYTYHIDNKKYEKALTRHHIGHAFRKSWTRKDSEHKCSKKSTSLAGMVEFVGLIKVNVRKGTHLAIRDVVTSDPYVILSLGHQSVKTRVIRNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSTANESVQLEKFVESRDNTLVRDGVISLEDGKIKQEISVRLQNVERGVLEIELECVPLIQ* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1196 367 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 208 302 IPR035892 -
Mtr8g1196 367 CDD ArfGap 20 126 - -
Mtr8g1196 367 CDD C2_ArfGAP 210 354 - -
Mtr8g1196 367 Pfam C2 domain 212 298 IPR000008 -
Mtr8g1196 367 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Mtr8g1196 367 SUPERFAMILY ArfGap/RecO-like zinc finger 17 133 IPR037278 -
Mtr8g1196 367 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 9 367 - -
Mtr8g1196 367 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 367 IPR044518 GO:0005096|GO:0005543
Mtr8g1196 367 Gene3D C2 domain 210 364 IPR035892 -
Mtr8g1196 367 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Mtr8g1196 367 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Mtr8g1196 367 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Mtr8g1196 367 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Mtr8g1196 367 SMART C2_3c 212 307 IPR000008 -
Mtr8g1196 367 SMART arf_gap_3 18 140 IPR001164 GO:0005096
Mtr8g1196 367 Gene3D Arf GTPase activating protein 1 140 IPR038508 -
Mtr8g1196 367 ProSiteProfiles C2 domain profile. 194 309 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1196 Mtr-Chr8 14612948 14618776 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0408 3 5139448 5146009 Mtr8g1196 8 14612948 14618776 PCT