Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1170 ATGAAGCAAGAAACGGCAACACCAGAATCGCAAATCGCAAGCAGGAAGAGAAGAATTTCATCTGAGGAAGGATGCAAAAAACTTAAGTTATCAAGTGATGGTTTGCCATGTTCAGTACAAGCTAAGGTTGTTGATTACAGTAATCCGTATGCAATCACAGAAGTTTTAAATAGTTTAGAGGGTGGAGAATATGGTAGTGTGACAAAGGATATTGATGCCCTTATAACCCGAAAAATGCAAGTATTAGGCCCCTACTTTGCTAAATATCCTACCCTTATTGATCGATTCTTGAAAGTGGTGACAGTTCAGGATGAAAAAAGCCACCACTCAGATCAAAATGTCATAGATTTGGATGAGGGACAAATTCAAAGGGATGTTGCGGCACCAAAAAGAGAAAAGGATGTTCCTGCAGCACAATGCCCTGTTGTTATAATTGATTCAGACGAGGAGGATGATAGGGATCAGAAGTCTTTTCATGCGTACCATGAAGTTGTTTTGCCAAAACGGCAGTCTCCTGCATTAAAAATGATTGGATATCATCCTCCCAATGCTTACAATGGAGAAAGTTCAGATCTAAAATTTGAAACAAGTCTGCCTCTTAATGCATACTATGGAGAAAGTGCGGATAAAAAAATTGAAAAAAAACTGCCTCCTAAAGATAACCCAAGGAAAGATAAAGGTGTTTATCTTGGTGTACAAGAGGAAGAAGATAATGCGGTTGATGCTGAAGATGACGGGCTAGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAAACTTCTAAAGATGTTTCTGCAGATCCTCCGCCCGAAGAAGAAGAAGAAGAGGAAGAAGATGCTGACTGCGATCATTCTTTTGTTCTAAAAGACGATCTTGGATATGTTTGTCGTGTTTGTGGGGTTATTGATAGAGGAATTGAAACCATATTTGAGTTTCAATACAAGGTTAAAAGGAGCACCAGGACTTATATGTCTGATTCGTCGAAAGACAAAGGAAAAGTTGATGCGTTTGGAGTGAAGATTGCTGAAGAAGATTTCTTGGTAACTGACATATCAGCCCATCCCCGGCATGCAAATCAAATGAAACCGCACCAAGTTGAAGGATTCAACTTTCTCGTCAGAAACTTGGTGGGAGACCATCCCGGGGGATGCATCCTGGCTCATGCTCCAGGATCGGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCCAATGCTCGACCTCTAGTGGTGCTTCCCAAGGGAATATTGTCGACTTGGAAGAAAGAGTTTCAAACGTGGCAAGTGGAAGATATACCGCTCTATGATCTATACACTGTGAAGGCTGACAGCAGATCTCAGCAACTGGAGGTGTTAAAACAATGGATGAATAACAAAAGTATTCTTTTCTTAGGATACAAACAGTTCTCCTCCATTGTGTGTGATAATAGTAATAACAATGCATCAATATCATGCCAAGAGATATTGCTTAAAGTTCCCTCGATTCTCATTTTAGATGAGGGACACACTCCAAGAAATGAGAATACAGATATGGTACAGTCTCTTGCCAAAGTACAAACTCCTAGGAAAGTTGTATTGTCTGGAACTCTTTATCAAAATCATGTTAGGGAGGTTTTCAATGTTCTCAATCTTGTGAGGCCGAAGTTTCTAAAGATGGAAACATCTAAGCCTATCGTCCGACGCATTCAGGCTAGGGTCCATATACCTAGCGTGAAACGCTTTGACGATTTGGTTGAGAATACATTACAGAAGGACCCAGATTTTAAAAGGAAAGTTGCTGTAATTCATGATTTGCGTGAGATGACCAGTAAAGTTCTTCACTACTACAAAGGCGATTTTCTTGACGAGCTTCCTGGCCTGGTAGATTTCACTGTGGTGCTCAAACTTACGCCCAGGCAGAAGATTGAAGTTGAGAAAGCAAAGAAGATGTATATTAGAAAGTTCAAATTTTCTTCTGTAGGCAGTGCAGTGTATCTGCACCCAAAGTTGAAGCCAATTGCAGAGAAATGTGATGAAAATTCCATATCTGATCATATCATGGATGATTTTATAGCAGACCTTGATATGAGAGATGGAGTCAAATCAAAGTTCTTTCGCAATATGCTGAACCTATGTGAATCAGCCGGGGAAAAACTTCTGGTGTTCAGTCAATATCTATTGCCTTTGAAATATTTGGAAAGGTTAGCCATGAAGTGGAAGGGTTGGAGTCTCGGAAAAGAAATCTTCGTGATTTCAGGAGAATCTTCCGCTGAACAAAGAGAGTTTTCAATGGAGAAGTTTAACAATTCACCCGAGGCAAAAATATTTTTTGGCTCAATCAAAGCATGTGGTGAAGGGATTTCATTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTTCATCTCAACCCATCTGTTACTCGTCAAGCTATTGGTCGTGCTTTTCGGCCAGGACAGAAAAAGAAAGTCTTTGTGTATCGTTTGATAGCTGCTGATTCTCCAGAAGAGGAAGATCACCATACTTGTTTCAAGAAGGAGTTAATCTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACCGTGCATTTGAAGTTGAAACACTTGATGTGAAAGAATGTGGTGATCTATTTCTAGAGAGCCCGTTGTTAGGGGAAGACGTAAAAGCTCTGTATAAAAGGTAA 2682 0.4008 MKQETATPESQIASRKRRISSEEGCKKLKLSSDGLPCSVQAKVVDYSNPYAITEVLNSLEGGEYGSVTKDIDALITRKMQVLGPYFAKYPTLIDRFLKVVTVQDEKSHHSDQNVIDLDEGQIQRDVAAPKREKDVPAAQCPVVIIDSDEEDDRDQKSFHAYHEVVLPKRQSPALKMIGYHPPNAYNGESSDLKFETSLPLNAYYGESADKKIEKKLPPKDNPRKDKGVYLGVQEEEDNAVDAEDDGLEDIWREMSMAIETSKDVSADPPPEEEEEEEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSDSSKDKGKVDAFGVKIAEEDFLVTDISAHPRHANQMKPHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRSQQLEVLKQWMNNKSILFLGYKQFSSIVCDNSNNNASISCQEILLKVPSILILDEGHTPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLKMETSKPIVRRIQARVHIPSVKRFDDLVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQKIEVEKAKKMYIRKFKFSSVGSAVYLHPKLKPIAEKCDENSISDHIMDDFIADLDMRDGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERLAMKWKGWSLGKEIFVISGESSAEQREFSMEKFNNSPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLIAADSPEEEDHHTCFKKELISKMWFEWNEYCGDRAFEVETLDVKECGDLFLESPLLGEDVKALYKR* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1170 893 CDD SF2_C_SNF 700 828 - -
Mtr8g1170 893 Pfam SNF2-related domain 381 570 IPR000330 GO:0005524|GO:0140658
Mtr8g1170 893 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 554 IPR014001 -
Mtr8g1170 893 PANTHER PROTEIN CHROMATIN REMODELING 35 15 893 - -
Mtr8g1170 893 Gene3D - 330 587 IPR038718 -
Mtr8g1170 893 SMART helicmild6 732 817 IPR001650 -
Mtr8g1170 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 855 IPR027417 -
Mtr8g1170 893 MobiDBLite consensus disorder prediction 260 282 - -
Mtr8g1170 893 Gene3D - 624 880 IPR027417 -
Mtr8g1170 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 556 IPR027417 -
Mtr8g1170 893 SMART ultradead3 357 567 IPR014001 -
Mtr8g1170 893 Pfam Helicase conserved C-terminal domain 708 816 IPR001650 -
Mtr8g1170 893 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 703 871 IPR001650 -
Mtr8g1170 893 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 15 893 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1170 Mtr-Chr8 14305810 14313420 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr8g1170 SNF2_N 2.3e-19 CL0023