Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1169 ATGGCGGAGCACAGTACTGCCACCGTCAACCACCAACAAAACAACAACAACAACATCAACGACGACGACGACAAGAAGAAAGATAAGACTTCAGATCCAGACTTATTCTGCTGTCTTCTTCAACCTCTCACCTCCGACGCTGATCCTGAGTACACCGGCATTCGTCGCCTCCTTCTTCACCAAAAAGCCGAAGCTGGAATTCTCCGCCGTAAGGATTGGAGATGCAATGGGAAAACTTACGTGGCATACCGGAATTATATAAACAGGCCGAGGAACTGGGAGAGTTTAGGACGAGCCCCAAGTCTTCGAAGTACTCCGGGAAACAGTGGCCGCTGGTTTCCATCTCCAAGTCCACTCTCCCGTTGGTCTGAGGTGGACAGCTGGAGTTCTGGGAGGGATGTCCAAGTTGCAAATTCAGTATCTAATCATAGAGCAAGTTTTGGCTCTGGGTCAAATGCAAGTGATTCTGATCGTCCACGAATTCGTGGTGTTGAGCCTGCCTATTCCTTCGTAGGAATGCATTGCATCTTCGACCAGTGCAAAGCCTCTGTTACGGTGATAAAGTTTGGGCACATGAGTTCTGACCTACTTGCTTATGGGGCATCAGATGGAACCTTGACTGTGTGCAGTGTTTCAGAGAAACCTTCAGTCATCAAACAATTAAACGGCCATTCGAAAGACATTACAGATTTCGATTTTACATCAAACAATCAGTACATTGCTTCTGCTTCGTTGGATAAAACTGTAAGAGTATGGGAGATAGAAAAAGGAAATTGCATGCGGGTGATATATGGAGTTTCTTCACAGTTGTGTATCCGTTTCCACCCTGTAAATAACAACTTCCTTTCTGTTGGCAATGCAAACAAAGAAATCAATGTGTTCAATTTTAGCACTGGGAGGACAATTAACAAGTCGGTATTTGACGCCGAAGTTACCTCTATGGACCACGACCATACGGGCCATCTCATATTTTGTGGAGATGCGCAGGGATGTATATACTCTGTAAATATGAACTCCCACACAGGTATATTATCCCGCTCACATCGTCATCGAAGTAGCAGCAAACACAGATCTCCAGTCACAACAATGCAGTATAGGAGTTTCTCTCTGCTAGCTCGAGGACCTGTGTTGCTGACCTGTACTCAGGATGGAAATCTATCTTTTTTCAGTGTGGCTTTGGAGATAAAAGGTTATTTAACTCTTCGTTGCTCGCTCAAGTTAACTCCTCGGATACACAAAATTCAAGCTTCTTTCTGCCCCCTTCTTTCTCTTGAAAAAGGAGAATTCATTGTTGCTGGAAGTGAGGACTCAAACGTCTATTTTTATGATTTAACAAAGCCAAAGCATACATGTGTGAACAAGCTACAGGGTCATCGGTTTCCTGTGATGGGGATTGCTTGGAACCATGGAGAAAACTTTTTGGCTTCATCTGATTTTTACGGCATAGTAATTGTTTGGAAGAGAGAAAGAACAAATCAGAACATGAATACATAG 1494 0.4398 MAEHSTATVNHQQNNNNNINDDDDKKKDKTSDPDLFCCLLQPLTSDADPEYTGIRRLLLHQKAEAGILRRKDWRCNGKTYVAYRNYINRPRNWESLGRAPSLRSTPGNSGRWFPSPSPLSRWSEVDSWSSGRDVQVANSVSNHRASFGSGSNASDSDRPRIRGVEPAYSFVGMHCIFDQCKASVTVIKFGHMSSDLLAYGASDGTLTVCSVSEKPSVIKQLNGHSKDITDFDFTSNNQYIASASLDKTVRVWEIEKGNCMRVIYGVSSQLCIRFHPVNNNFLSVGNANKEINVFNFSTGRTINKSVFDAEVTSMDHDHTGHLIFCGDAQGCIYSVNMNSHTGILSRSHRHRSSSKHRSPVTTMQYRSFSLLARGPVLLTCTQDGNLSFFSVALEIKGYLTLRCSLKLTPRIHKIQASFCPLLSLEKGEFIVAGSEDSNVYFYDLTKPKHTCVNKLQGHRFPVMGIAWNHGENFLASSDFYGIVIVWKRERTNQNMNT* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1169 497 PANTHER WD REPEAT-CONTAINING PROTEIN 13 16 491 - -
Mtr8g1169 497 MobiDBLite consensus disorder prediction 141 160 - -
Mtr8g1169 497 ProSitePatterns Trp-Asp (WD) repeats signature. 240 254 IPR019775 -
Mtr8g1169 497 Gene3D - 268 395 IPR015943 GO:0005515
Mtr8g1169 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 258 - -
Mtr8g1169 497 Gene3D - 170 267 IPR015943 GO:0005515
Mtr8g1169 497 Pfam WD domain, G-beta repeat 218 252 IPR001680 GO:0005515
Mtr8g1169 497 Pfam WD domain, G-beta repeat 451 487 IPR001680 GO:0005515
Mtr8g1169 497 MobiDBLite consensus disorder prediction 141 156 - -
Mtr8g1169 497 SUPERFAMILY WD40 repeat-like 176 488 IPR036322 GO:0005515
Mtr8g1169 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Mtr8g1169 497 Gene3D - 410 495 IPR015943 GO:0005515
Mtr8g1169 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 455 496 IPR001680 GO:0005515
Mtr8g1169 497 MobiDBLite consensus disorder prediction 98 119 - -
Mtr8g1169 497 MobiDBLite consensus disorder prediction 1 27 - -
Mtr8g1169 497 MobiDBLite consensus disorder prediction 1 17 - -
Mtr8g1169 497 MobiDBLite consensus disorder prediction 96 119 - -
Mtr8g1169 497 PANTHER WD REPEAT PROTEIN 26-RELATED 16 491 - -
Mtr8g1169 497 SMART WD40_4 448 487 IPR001680 GO:0005515
Mtr8g1169 497 SMART WD40_4 346 390 IPR001680 GO:0005515
Mtr8g1169 497 SMART WD40_4 407 443 IPR001680 GO:0005515
Mtr8g1169 497 SMART WD40_4 214 253 IPR001680 GO:0005515
Mtr8g1169 497 SMART WD40_4 170 210 IPR001680 GO:0005515
Mtr8g1169 497 SMART WD40_4 256 295 IPR001680 GO:0005515
Mtr8g1169 497 SMART WD40_4 298 336 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1169 Mtr-Chr8 14290513 14298926 Dispersed