Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1162 ATGAGTAACATAAGTAGTAACATGTTAAACACCTTGAGAAGTTACCGTGGTAGCCAAGTCTTCAAGTTTAGCACTACTACTATCCATTCTCACAAACCCATTTGTGTAAAGATCAAATCATTTTCACTTAGACGAGGGATTGTGAAAGTGGAACCAAAACCAAGAAAATGTTTCAGTTCAAAAGCTGTTGACTTGTTGGAAAAGCTTGTTGTGAAATTCTTTTATGATTCTTCACTTTGTCATCATTGGCTTGCTGGTAATTTTGCACCTGTTCAAGATGAGACACCTCCTATTAAGGATCTTCCTGTTAAGGGACACCTTCCGGATTGCTTGAATGGAGAGTTTGTTAGGGTGGGACCTAATCCGAAGTTTTCTCCCGTTGCTGGATATCATTGGTTTGATGGAGATGGAATGATTCATGGTTTGCGTATCAAAGATGGAAAAGCTACATATGTTTCCCATTTTGTGAGAACTTCTCGCCTTAAACAAGAAGAATACTTTGGAGGCTGTAAATTTATGAAGATTGGAGATGTCAAGGGTCTACTTGGACTTTTAATGGTTACCATACAAACGTTGAGAGAAAAGTTGAAAATACTTGATGTTTCTTATGGAACTGGAACAGCAAATACAGGTCTTGTATATCACAATGGGAAGCTTCTAGCGCTCTCAGAACGAGACAAACCATATGCTATTAAAGTTTTTGAAGATGGTGATTTGCATACACTTGGTATGTTAGATTATGAAAAGAGACTTGACCATTATTTCACCGCTCATCCAAAAGTTGATCCTTTTACTGGGGAGATGTTTACATTTGGATATTCACAAACACCACCATATATCACATACAGAGTAATTTCAAAAGATGGTTATATGTATGATCCTGTTCCAATAACAATATCAGATCCCATCATGGTGCATGACTTTGCCATAACCGAAAATTACGCAATTTTTATGGATCTTCCTGTGTACTTTAGGCCAAAGGAAATGGTGAAGAATAATAAACTCATATTCTCTTTTGATTCAACCAAGAAAGCTCGTTTTGGTGTCCTACCTCGATATGCTAAAGATGATAAGCTCATAAGATGGTTTGAATTGCCAAATTGCTTCATATTCCATAATGCTAATGCTTGGGAGGAGGAGGATCAAGTTGTTTTGATCACGTGCCGACTGAATAATCTAGATTTGGATATGGTCAGCGAGGATGTCAAGGATAAACTTGAAAGTTTCTCAACTCAATTGTATGAAATGAGGTTTAACATGAAAACCGGTAAAGCTTCTCAAAAGAAACTATCAGCATTTTCTGTAGATTTTCCGAGGGTGAATGAAAGATATACCGGAAGGAAACAGAAGTATGTTTATGGAACCATATTAGACAGCATTCCAACTGGGATTGTAAAATTTGATTTGAGTGCCAAACCTGATTTCGGCAAAACAAAGCTTGAAATTGGAGGAAATGTTCATGGTATCTATGACTTGGGACAAGGAACATTTTGCTCTGATCCTATTTATGTCCCACGCGTCCCTGGAACTGATTCCGATGAAGATGATGGATACTTGATCTTTTTTGTACATGATGAGAATACTAGGAAATCGTTCGTACATGTCATAGATGCAAAAACAATGTCAGCAGATCCTGTTGCAGTTGTAGAATTGCCTCAAAGAGTTCCATATGGTTTCCATTCCTTCTTTATGACAGAGGACCAACTGCAAGAACAAGCCAAACTATAA 1728 0.375 MSNISSNMLNTLRSYRGSQVFKFSTTTIHSHKPICVKIKSFSLRRGIVKVEPKPRKCFSSKAVDLLEKLVVKFFYDSSLCHHWLAGNFAPVQDETPPIKDLPVKGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKATYVSHFVRTSRLKQEEYFGGCKFMKIGDVKGLLGLLMVTIQTLREKLKILDVSYGTGTANTGLVYHNGKLLALSERDKPYAIKVFEDGDLHTLGMLDYEKRLDHYFTAHPKVDPFTGEMFTFGYSQTPPYITYRVISKDGYMYDPVPITISDPIMVHDFAITENYAIFMDLPVYFRPKEMVKNNKLIFSFDSTKKARFGVLPRYAKDDKLIRWFELPNCFIFHNANAWEEEDQVVLITCRLNNLDLDMVSEDVKDKLESFSTQLYEMRFNMKTGKASQKKLSAFSVDFPRVNERYTGRKQKYVYGTILDSIPTGIVKFDLSAKPDFGKTKLEIGGNVHGIYDLGQGTFCSDPIYVPRVPGTDSDEDDGYLIFFVHDENTRKSFVHVIDAKTMSADPVAVVELPQRVPYGFHSFFMTEDQLQEQAKL* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1162 575 Pfam Retinal pigment epithelial membrane protein 88 564 IPR004294 GO:0016702
Mtr8g1162 575 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 1-3 44 571 - -
Mtr8g1162 575 PANTHER BETA-CAROTENE DIOXYGENASE 44 571 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1162 Mtr-Chr8 14205996 14211279 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1162 8 14205996 14211279 Mtr8g1162 8 14205996 14211279 ECH