Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1158 ATGATGGAGCCAGAAGGGGAAGCTGGGGGAAAGCCAATGACAACATTGGGTGATCAAGTATGCAAGATTTGTGGGGAAAATATTGGGAAGACGGTTGATGGTGAACCATTCATTGCATGTGATGCTTGTGCTTTTCCTGTTTGTCGGCTTTGCTATGAGTATGAAAGGAAAGATGGGAAGCAATCTTGCCTTCAGTGTAAAACCCGATACAAGAAGCATAAAGGTAGTCCTGCAGTTATTGGAGATAGTGAAGAGGAGGTAGGCGGTGATGATGTTGCTCTTGAATTCAATTATGATTTGGAAAACCTAAACCAAAAACAAAAGCAGAAGATTTCAGAGCGCATGTTGGGGTGGCAGTTAACACTCGGGCGATCAGGAGAGCTTGGCACCCTAAATTACGATAAGGAAGTTTCTCACAATCACATTCCTAGACTGACAAGTGGACAAGAGGTGTCTGGAGAATTTTCTGCAGGCTCCCCTGAGAGGCTCTCAATGTCATCACCCGTAGCTGGTGGGGGGAAGCGTGTCCATAGTCTTCCATATTCGTCTGATGTTAATCAATCTCCAAATACAAGGATTGTCGACGCAAAATTGGGCAATGTAGCATGGAGAGAAAGAGTTGACGGCTGGAAGATGAAGCCAGAAAAGAATGCTGCTCCGATGAGCACAGGCCAAGCTGCTTCTGAAAGAGGGGCTGGAGATATTGATGGCAGATCTGATGTCCTTGCTGATGATTCATTGTTGAATGATGAAGCTCGGCAGCCTCTTTCCAGGAAGGTTTCTATTCCATCATCTAGGATAAATCCTTATCGATTGGTCATTGTTCTGCGACTGGTTGTCCTTTGCATTTTCTTGCATTATCGATTAACAAATCCGGTCCGCAATGCATATGCATTATGGTTGGTATCAGTTATATGCGAGATTTGGTTTGCCATATCCTGGATATTGGATCAATTCCCTAAGTGGCTTCCTGTCAACCGCGAAACATATCTCGACAGACTTGCACTGAGATATGATCGGGAAGGAGAACCATCTCAACTAGCGGCTGTCGACATTTTTGTCAGTACCGTTGACCCGTTAAAGGAGCCTCCACTCGTGACTGCCAATACTGTACTTTCTATTCTTTCAGTTGACTATCCAGTGGATAAGGTTTCCTGCTATGTTTCTGATGACGGCGCCGCTATGTTGACATTTGAAGCTCTTGCTGAAACATCAGAGTTTGCAAGAAAATGGGTTCCATTCACCAAGAAGTATAATATTGAACCCCGCGCACCCGAGTGGTACTTTGCACAGAAGATTGATTACTTGAAGGATAAGGTTCAGACATCATTTGTCAAGGATCGTAGAGCAATGAAGAGAGAATACGAAGAATTTAAAATTCGTATTAATGGACTTGTTGCGAAGGCAACAAAAGTTCCGGAAGAAGGGTGGGTAATGCAAGATGGTACACCGTGGCCTGGAAATAATGTCAGAGACCATCCGGGAATGATCCAGGTTTTCTTAGGCCAAAGTGGAGGACTTGACACTGATGGCAACGAACTTCCACGTTTAGTCTATGTTTCTCGTGAAAAGCGTCCAGGTTTCCAACATCACAAGAAAGCTGGTGCCATGAATGCACTTGTTCGAGTATCTGCTGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCCTTGAGGGAGGCTATGTGCTTTATGATGGATCCTAACCTCGGTAAACATGTTTGCTATGTCCAGTTTCCACAGAGGTTTGATGGTATTGATAGGAACGATCGATATGCCAATCGTAATACTGTTTTCTTTGACATAAATCTGAGAGGTTTGGATGGCATTCAAGGTCCTGTTTATGTCGGTACTGGATGTGTCTTCAATAGGACGGCTTTATACGGCGAAGAACCTCCTCTTAAACTGAAACATAAAAAGCCTGGGTTTCTGTCATCACTCTGTGGTGGAAGTAGAAAGAAGAGTTCAAAATCTAGTAAGAAAGGATCAGACAAGAAAAATTATAACAAGCACGTCGATCCAACTGTGCCGATCTTCAGTCTGGAGGATATTGAAGAAGGAGTAGAAGGTTCTGGATTTGATGATGAGAGAGCACAACGTATGTCACGAGAGGACCATGAGAAAAGATTTGGCCAATCAACTGTTTTTGTTGACTCTACGCTGATGGAGAATGGTGGTGTTCCTCAGAGTGCTACTCCAGAAACTCTTCTGAAGGAGGCTATTCATGTTATCAGCTGTGGTTATGAGGATAAATCAGAATGGGGAACAGAGATAGGATGGATTTACGGTTCCGTCACAGAAGATATTCTTACTGGATTCAAGATGCACGCCCGTGGTTGGCGGTCTATATACTGCATGCCTAAGCGGCCAGCATTTAAAGGTTCTGCACCCATCAATCTTTCTGATCGTCTAAACCAAGTGCTTCGATGGGCTTTAGGTTCTGTTGAAATTCTTTTTAGCCGACATTGTCCCATCTGGTATGGTTATGGTGGAAGACTAAAGTGGCTTGAAAGGTTTGCATACATTAACACCACGATCTATCCAGTCACTGCCATTCCCCTTCTCATGTATTGTACCTTGCCAGCTGTCTGTCTTCTCACAAACAAGTTCATCATCCCTCAGATTAGCAACTTAGCTAGTATATGGTTTATCTCTCTCTTTCTTTCCATCTTCGCAACTGGAATCCTAGAGATGAGATGGAGTGGTGTTGGAATTGATGAGTGGTGGAGAAACGAACAGTTTTGGGTTATCGGTGGTGTGTCAGCACATCTTTTCGCCGTGTTCCAAGGTCTACTAAAAGTACTTGCTGGAATCGACACAAACTTCACCGTCACCTCCAAAGCATCAGATGAAGACGGAGACTCCGCAGAACTTTACATGATTAAATGGACAACACTTCTCATTCCTCCAACAACGCTTCTTATAATAAACTTGGTAGGAGTTGTTGCTGGTATATCTTATGCTATCAATAGTGGTTACCAATCATGGGGTCCACTCTTTGGTAAACTTTTCTTTGCATTTTGGGTTATCGTTCATCTCTACCCTTTCCTTAAAGGTCTTATGGGACGCCAGAATCGAACGCCAACCATTGTTGTGGTCTGGTCGATTCTTCTTGCATCCATTTTCTCTCTATTATGGGTTCGAGTTGATCCGTTTACTACAAGAGTCACTGGTCCTAAAGCTGAGGAGTGTGGAATTAACTGCTAG 3237 0.4356 MMEPEGEAGGKPMTTLGDQVCKICGENIGKTVDGEPFIACDACAFPVCRLCYEYERKDGKQSCLQCKTRYKKHKGSPAVIGDSEEEVGGDDVALEFNYDLENLNQKQKQKISERMLGWQLTLGRSGELGTLNYDKEVSHNHIPRLTSGQEVSGEFSAGSPERLSMSSPVAGGGKRVHSLPYSSDVNQSPNTRIVDAKLGNVAWRERVDGWKMKPEKNAAPMSTGQAASERGAGDIDGRSDVLADDSLLNDEARQPLSRKVSIPSSRINPYRLVIVLRLVVLCIFLHYRLTNPVRNAYALWLVSVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFTKKYNIEPRAPEWYFAQKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINGLVAKATKVPEEGWVMQDGTPWPGNNVRDHPGMIQVFLGQSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGEEPPLKLKHKKPGFLSSLCGGSRKKSSKSSKKGSDKKNYNKHVDPTVPIFSLEDIEEGVEGSGFDDERAQRMSREDHEKRFGQSTVFVDSTLMENGGVPQSATPETLLKEAIHVISCGYEDKSEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYINTTIYPVTAIPLLMYCTLPAVCLLTNKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDSAELYMIKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPKAEECGINC* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1158 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 94 IPR013083 -
Mtr8g1158 1078 MobiDBLite consensus disorder prediction 148 184 - -
Mtr8g1158 1078 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 1078 - -
Mtr8g1158 1078 Pfam Cellulose synthase 350 1071 IPR005150 GO:0016020|GO:0016760|GO:0030244
Mtr8g1158 1078 MobiDBLite consensus disorder prediction 657 681 - -
Mtr8g1158 1078 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 505 640 IPR029044 -
Mtr8g1158 1078 CDD mRING-HC-C4C4_CesA_plant 19 69 - -
Mtr8g1158 1078 MobiDBLite consensus disorder prediction 148 163 - -
Mtr8g1158 1078 Pfam Zinc-binding RING-finger 11 86 IPR027934 -
Mtr8g1158 1078 SUPERFAMILY RING/U-box 6 86 - -
Mtr8g1158 1078 MobiDBLite consensus disorder prediction 213 237 - -
Mtr8g1158 1078 PANTHER CELLULOSE SYNTHASE 3 1078 - -
Mtr8g1158 1078 SUPERFAMILY Nucleotide-diphospho-sugar transferases 364 890 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1158 Mtr-Chr8 14178729 14186031 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1158 8 14178729 14186031 Mtr8g1158 8 14178729 14186031 ECH
Mtr8g1158 8 14178729 14186031 Mtr3g0718 3 10014391 10023057 PCT