Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0778 ATGGAAGGGTTATCTCCTAATTCATGTCCAAGGCAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAACTGTCCAAGGTGCAATTCAACCAACACAAAATTTTGTTATTATAACAACTACAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCAGTTGGAGGTGGTTCAAGAAAGAACAAGAAAATTCCATCATCATTAGCCAACCCTAATAATAGTTCATCAAAAATTCCTGACCTAAATCCACCAACCCTACAAGTTTCACATCTTTCATCTCAAAACCCTAAAATACAAGGAGGCCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCATAATCATGGTATGCCATCTTCATATGTTGAGATGCATAACAATAATGAATCATCTTCTTCAGCTCTTGACCTACTTAGGTCAAGCATGGCATCTAGAGGCATGAACCCTTATGCTAATAACAATAATTTAGGGTTGCCAAACTCAAATGCTATTTATCCATCTGGATTCACCATGCAAGAAGTTAAACCTAGTCTTGGATTTTCAATTGATGGAATTAATGGAAATAGATCATATGATCATGTTCAAGTTCAAGAAGGTGGTGGTGGTGGTGGTGGAAGACTTTTGTTCCCATTTGGAGATGTTAATGTTAATAATAAACAGCTTTCTACAAGTGGTGTTGAAGTGGAACACAATAAAGATCAACAAGGAAATTCAACTGGATATTGGAATGGAATGATGGGTGAAGGATCATGGTAA 810 0.3691 MEGLSPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIPSSLANPNNSSSKIPDLNPPTLQVSHLSSQNPKIQGGQDLNLAFPSMENYHHNHGMPSSYVEMHNNNESSSSALDLLRSSMASRGMNPYANNNNLGLPNSNAIYPSGFTMQEVKPSLGFSIDGINGNRSYDHVQVQEGGGGGGGRLLFPFGDVNVNNKQLSTSGVEVEHNKDQQGNSTGYWNGMMGEGSW* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0778 269 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Mtr8g0778 269 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Mtr8g0778 269 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 265 IPR045174 GO:0003700|GO:0006355
Mtr8g0778 269 MobiDBLite consensus disorder prediction 1 22 - -
Mtr8g0778 269 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Mtr8g0778 269 MobiDBLite consensus disorder prediction 78 114 - -
Mtr8g0778 269 MobiDBLite consensus disorder prediction 65 114 - -
Mtr8g0778 269 MobiDBLite consensus disorder prediction 249 269 - -
Mtr8g0778 269 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 6 265 - -
Mtr8g0778 269 MobiDBLite consensus disorder prediction 249 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0778 Mtr-Chr8 9583408 9585576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0778 16 269 C2C2-Dof Transcription Factor Family AT3G61850 51.957 8.26e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr8g0778 zf-Dof 3.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0778 - - gmx:778110 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0778 8 9583408 9585576 Mtr8g0778 8 9583408 9585576 ECH