Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2157 ATGTTCCTAAATATTACATACATCTCTTTCTTATGTTTCTTCTTATTGATAATAATCACTTCTTTTCCAACACAATCCCACTCTCAACCAGTTCACGATTATTCAAGTTGTAACTATGTCGACCATTCTTACAACTGCGGAAATATTTCCAACATAATATATCCATTTTGGGGACAAAATCGTCCGTATCGCTGTGGCGCCGGCAACCCGTTTTACCTTAACTGCCACAACAACAGTATTACTACCATTCTATTATCATCACAAAATTTCACAGTACTTGATATTAACTCACAAATTCACACCATCAAACTTAAGAGAACAGACCTTTCCCAAAATTTTTGTTCTCCTCAATACAATGATACTTTCTTGTCTCCAACAATATTTCAGTACCTCCCAAGTGTCAAAATCATAGACATATACTACAATTGTACTTACAATGTCTCTCAAGATTTACTTAAAAAATCTCTGTGTGGATCTCACAATCCTTCCTTTTCTGATTCCCATTGGCTGTTTTTCGAAAATCTAGATCAAAAGAGATGTGAGAAACATATTAAAGTGCCGGTAGAATATGAACATTATTTTGATTATGACGATCTCAAAGAATATTTGGATAAGGGATTTGAGGTAGAATACAGTGTGAATGAGGGATGTTTAAATTGTTTGGGAAATGAAGGATATTGTTCGAGTGATTATTTGGATAAAAATGTTGATTTGTGCTATTATGATAATTGTCCAGATGGGTCTATTGATAATAACTGTTCTCCTCTTCACAATAATTCCTCTACTACCATCACAGGTAAGCAGTTGAGCAGGCAAGGGAAAATGAAAATCATTCTAGGTGTTGGAAGTGCAGCAATGGTAGCATTGCTGATGTGCATCACAATTTGTTATTTTAGAGGCAAGTCATTAATACAACAAGTAACATCTTGGTTTAGGACAAAGAATGATAAAAACATTGAAGCATTTTTAAAAGATCATGGAGCTCTATTGCAGAAAAGATATAAATATTCAGAAATAAAGAACATGACAAACTCGTTAAAGGATAAGCTCGGGCAAGGGGGTTTTGGTGTTGTGTACAAAGGAAAGTTATTTAATGGTTGTCTTGTGGCAGTGAAGATATTGAATGTATCAAAAGGAAATGGTGAGGAATTTATTAATGAGGTTGCTAGTATTTCTAGAACCTCTCATGTTAATGTTGTCACCCTTCTTGGATTTTGTTTTGAAGGCAACAAAAAAGCTCTCGTATATGAATTTATGTCAAATGGTTCTCTTGACAAATTTATCTACAATAAGGAACTTGAAACAATTGCATCTTTGAGTTGGGATAAATTGTATAAAATTGCAAAAGGGATAGCTCGTGGACTAGAGTACTTGCATGGAGGATGTACCACTAGAATTTTACATTTTGACATAAAACCACACAACATCCTTTTAGATGATAATTTATGTCCGAAGATTTCAGATTTTGGACTTGCAAAACTATGTCTCAGGAAAGAAAGCATTGTTTCAATGTCAGATCAAAGAGGAACAATGGGGTATGTAGCTCCAGAAGTGTGGAATAGACATTTTGGAGGAGTTTCACACAAGTCTGATGTTTATAGTTATGGAATGATATTGCTGGAAATGGTTGGAGGGAGGAAAAACATTAATGCTGATGCAAGTCGCACAAGTGAGATATATTTTCCTCATTGGGTATACAAAAGGCTTGAGCTTGCTAGTGATTTTAGACCTGATGGAATAATGGATACAGAAGAAGATAAGATTGCAAGGAGAATGACCATTGTAGGTTTGTGGTGTATTCAAACGTTTCCTAATGATAGGCCTACAATGAGTAAAGTGATTGAAATGTTAGATGTTAGCATGAATTCGTTGGAAATGCCACCAAAACCATTGCTTTCTTCTCCGACTAGATCTGTATCAGAGTCTTCCACGTCCTAA 1938 0.3509 MFLNITYISFLCFFLLIIITSFPTQSHSQPVHDYSSCNYVDHSYNCGNISNIIYPFWGQNRPYRCGAGNPFYLNCHNNSITTILLSSQNFTVLDINSQIHTIKLKRTDLSQNFCSPQYNDTFLSPTIFQYLPSVKIIDIYYNCTYNVSQDLLKKSLCGSHNPSFSDSHWLFFENLDQKRCEKHIKVPVEYEHYFDYDDLKEYLDKGFEVEYSVNEGCLNCLGNEGYCSSDYLDKNVDLCYYDNCPDGSIDNNCSPLHNNSSTTITGKQLSRQGKMKIILGVGSAAMVALLMCITICYFRGKSLIQQVTSWFRTKNDKNIEAFLKDHGALLQKRYKYSEIKNMTNSLKDKLGQGGFGVVYKGKLFNGCLVAVKILNVSKGNGEEFINEVASISRTSHVNVVTLLGFCFEGNKKALVYEFMSNGSLDKFIYNKELETIASLSWDKLYKIAKGIARGLEYLHGGCTTRILHFDIKPHNILLDDNLCPKISDFGLAKLCLRKESIVSMSDQRGTMGYVAPEVWNRHFGGVSHKSDVYSYGMILLEMVGGRKNINADASRTSEIYFPHWVYKRLELASDFRPDGIMDTEEDKIARRMTIVGLWCIQTFPNDRPTMSKVIEMLDVSMNSLEMPPKPLLSSPTRSVSESSTS* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2157 645 Pfam Wall-associated receptor kinase galacturonan-binding 45 105 IPR025287 GO:0030247
Mtr6g2157 645 ProSiteProfiles Protein kinase domain profile. 344 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2157 645 SMART serkin_6 344 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2157 645 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Mtr6g2157 645 CDD STKc_IRAK 350 618 - -
Mtr6g2157 645 Pfam Protein kinase domain 347 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2157 645 Gene3D Transferase(Phosphotransferase) domain 1 419 626 - -
Mtr6g2157 645 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 85 645 - -
Mtr6g2157 645 SUPERFAMILY Protein kinase-like (PK-like) 331 617 IPR011009 -
Mtr6g2157 645 Pfam Wall-associated receptor kinase C-terminal 176 242 IPR032872 -
Mtr6g2157 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 85 645 IPR045874 GO:0004672
Mtr6g2157 645 Gene3D Phosphorylase Kinase; domain 1 304 418 - -
Mtr6g2157 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2157 Mtr-Chr6 38626491 38630248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2157 43 644 Receptor kinase-like Gene Family AT1G66910 40.816 1.28e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Mtr6g2157 Pkinase 1.1e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2157 6 38626491 38630248 Mtr8g3766 8 48165644 48169597 PCT