LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr6g2155	ATGCTACCTATTTCTCTTTTTTGTAGTTTCAAAACTATGTTGAAGCAGCTTTTCCTTCTGGATTTGGTGTTGATATTTTGTGTTCTAGTATTGGCCTCAGCTCAAAGTGAAATCAATGTGAATGCTACATATCGTTCTTTCAATTCTCCAACAACTAAACAAGGTATAGGAAACAAGTGGAACTTGAACACAGCAGGTGTGTTATGTGCATCTCAAGATGGGAACAAATCATTGTCATGGCGAAGCAAATATGGTTGGGCTGCCTTTTGTGGTATATGGCTAAGCAAATATGCTTGTGGCAAGTGCTTAAATGTGACAAACCAAGATGGTGGGAATTCGGCAGTGCAACAAAAATCAATAACTCCGACCACCCAAACAGTAAGAATTGTAGATGAGTGTAGCAATGGAGGGCTTGACTTGGATATGGATGTCTTTGACCTGCTTGACACATCTGGGGATGGCAATGCTCAAGGTTACCTTTTGGTGGATTATGAATTTGTGGACTGTGGTGATCTGTTAGCTTCGACTTTACCTAAGAATTTCTCCAATAGCTCAACTACCGTATCTCCGACACCAGCACCAACACCATCACCAACATTCTTATCGCCTAATCCTTTATCAAATCTTACTCAAGAAATTCATCGTGCTACAACTAGTAGTCACTCTAATTGGCAAATGAAAAGGAAAGTCATTATAGGTGTTGTAAGTCCAGTTATGGTTGTATTGATAATGTGCATCATTATTTATTGTCTTAGAAGCAAGTCATCAATACGACAGGGAAGGTTTCGGTTTAGAACCAAGAATGATAACAATATTGAAGCATTTTTAAAAGACCATGGAGCTTTATTGCAGAAAAGATATAAATTTTCTGAAATAAAGAAAATGACAAACTCTTTCAAGGTTAAACTTGGTCAAGGAGGCTTTGGTGTTGTGTACAAAGGAAAGTTATTCAATGGTTGTCACGTTGCTATAAAGATATTGAATCCATCCAAAGGAAACGGTGAAGAATTTATTAATGAGGTTTCTAGTATTTCTAGAACCTCACATGTTAACGTTGTTACCCTTCTTGGATTTTGTTTTGAAGGCACAAAAAAAGCACTCATATACGAATTTATGTCAAATGGTTCTCTTGACAAATTTATTTACAATAAGGGACCTGAAACAATTGCATCTTTGAGTTGGGAGAATTTGTATCAAATTGCAAAAGGGATAGCTCGTGGGCTAGAGTACTTGCATAGAGGATGTACCACTCGAATTTTACATTTTGACATAAAACCACATAACATTCTTTTAGATGAAAACTTATGTCCAAAGATTTCAGATTTTGGACTTGCAAAACTCTGTCCAAAACAAGAGAGCATTATTTCAATGTCAGATCAAAGAGGGACAATGGGATATGTAGCTCCAGAAGTGTGGAATAGACATTTTGGAGGAGTTTCACACAAATCTGATGTTTATAGTTATGGAATGATGTTGCTAGAAATGGTTGGAGGGAGGAAAAACATCATTGCTGATGCAAGTCACACTAGTGAGATATACTTTCCACATTGGGTATACAATAGGCTAGAGCTTGGCACTAATCTGAGACCTGATGGGGTTATGGATACAGAAGAAGATGAGATTGCAAGGAGAATGACTATTGTGGGTTTATGGTGCATTCAAACATTTCCAAGTGATAGACCTACAATGAGTAAAGTGATTGAAATGTTAGAAGTTACAATGAATTCACTGGAAATGCCACCAAAACCATTACATTCATCTCCCACTAGATCAGTATCAGAGTCTTCTTAA	1791	0.3713	MLPISLFCSFKTMLKQLFLLDLVLIFCVLVLASAQSEINVNATYRSFNSPTTKQGIGNKWNLNTAGVLCASQDGNKSLSWRSKYGWAAFCGIWLSKYACGKCLNVTNQDGGNSAVQQKSITPTTQTVRIVDECSNGGLDLDMDVFDLLDTSGDGNAQGYLLVDYEFVDCGDLLASTLPKNFSNSSTTVSPTPAPTPSPTFLSPNPLSNLTQEIHRATTSSHSNWQMKRKVIIGVVSPVMVVLIMCIIIYCLRSKSSIRQGRFRFRTKNDNNIEAFLKDHGALLQKRYKFSEIKKMTNSFKVKLGQGGFGVVYKGKLFNGCHVAIKILNPSKGNGEEFINEVSSISRTSHVNVVTLLGFCFEGTKKALIYEFMSNGSLDKFIYNKGPETIASLSWENLYQIAKGIARGLEYLHRGCTTRILHFDIKPHNILLDENLCPKISDFGLAKLCPKQESIISMSDQRGTMGYVAPEVWNRHFGGVSHKSDVYSYGMMLLEMVGGRKNIIADASHTSEIYFPHWVYNRLELGTNLRPDGVMDTEEDEIARRMTIVGLWCIQTFPSDRPTMSKVIEMLEVTMNSLEMPPKPLHSSPTRSVSESS*	597

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr6g2155	596	Gene3D	Phosphorylase Kinase; domain 1	259	371	-	-
	Mtr6g2155	596	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	220	596	IPR045874	GO:0004672
	Mtr6g2155	596	ProSitePatterns	Protein kinases ATP-binding region signature.	303	325	IPR017441	GO:0005524
	Mtr6g2155	596	Pfam	Barwin family	37	169	IPR001153	GO:0042742\|GO:0050832
	Mtr6g2155	596	SUPERFAMILY	Protein kinase-like (PK-like)	283	573	IPR011009	-
	Mtr6g2155	596	SMART	serkin_6	297	570	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr6g2155	596	Gene3D	Transferase(Phosphotransferase) domain 1	372	581	-	-
	Mtr6g2155	596	Pfam	Protein kinase domain	300	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr6g2155	596	ProSiteProfiles	Protein kinase domain profile.	297	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr6g2155	596	ProSiteProfiles	Barwin domain profile.	35	171	IPR001153	GO:0042742\|GO:0050832
	Mtr6g2155	596	SUPERFAMILY	Barwin-like endoglucanases	53	170	IPR036908	-
	Mtr6g2155	596	Gene3D	-	35	171	IPR036908	-
	Mtr6g2155	596	PANTHER	MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN	220	596	-	-
	Mtr6g2155	596	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	419	431	IPR008271	GO:0004672\|GO:0006468
	Mtr6g2155	596	ProSitePatterns	Barwin domain signature 2.	162	169	IPR018226	GO:0042742\|GO:0050832
	Mtr6g2155	596	ProSitePatterns	Barwin domain signature 1.	99	107	IPR018226	GO:0042742\|GO:0050832

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr6g2155	Mtr-Chr6	38569727	38611855	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr6g2155	181	584	Receptor kinase-like Gene Family	AT4G18250	50.971	3.12e-131	398

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Mtr6g2155		Pkinase	1.6e-46	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr8g3766	8	48165644	48169597	Mtr6g2155	6	38569727	38611855	PCT