Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0788 ATGAATGGTGAAGGTGACATGTTTGTTAAAGATTCTAGTTTCATGCTCTTTGGTAAGAAGATTCCGGTGAGTGATTCTCAGATTCAGGCCAATTCTACAACCATGATTTCTTGCAGTAACTCAAAGCATAAAGGAAATGATATGCCGCATACTCAAATCATTGAGAAATCGAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTTAACACAAGCATTGTGGAAGATAATGTGGAGACAAGCAGCACAGATCAAGACAAAGTCCTAAAGAAACCAGACAAGATTGTTCAATGTCCAAGATGCAAAAGTTTCGACACAAAATTTTGTTATTTCAACAACTACAATGTCAATCAACCTCGGCATTTTTGTCGGAGTTGTCACAGATATTGGACCAACGGTGGAACAATGAGAAACGTTGCTGTTGGTGCAGGGAGACGGAAGAACAAACACATAGCTTCTCAATATCGTCATATGATTGTAGCGTCCGATGGAATTCCGACTGCTAGTTTAGAAACCAATGACTCTTCTAGGTACCAACATGGCTCAAATCTTGAATCTGCTGCAGTTTTTAGGTGTTCAAATGATAATGGTATTGTCCTAAAATTTGGTCGGGAAAATGCCTCGCTCGATGAATCCAAAGGTTCAATGCTTAATCTTATGAACAACAGGAGACATGTTGATGCAAGTGGTAATAATTGTAGAGAAAATGGAGAGGAAGAAACATCGTTATGTGTATCGTCTGTGACAAACGGTCATACTCGAGGAAACGAGTTATTCGAATCCGAACAGAATAGGTCTAAACCTATGCAGAGCTACCCTGCATCTTCATGGATAATTCCAATGAATCAAAGATGGAACAATGTTACTTCTATGGTTCAATCATCAATGCAGATGTGTAACCCTTATGGCATTGATCCTACTGCAATGCAGTGGTGTCACGCGCCGATGGTGGCTGTTACAAACATTGGCTTGCAATTTGTTCCTGGATCAAACAGGAATGGAAATGTGTCCATAGGTTCAAATGGTTGCATTTCACCTTCTTCATCTACTACTAGTAATAGTTGTATCTCAGGTAATGGCACACCAATTCTTGGCAAACACACATGA 1107 0.393 MNGEGDMFVKDSSFMLFGKKIPVSDSQIQANSTTMISCSNSKHKGNDMPHTQIIEKSKNSSNEENESKVNTSIVEDNVETSSTDQDKVLKKPDKIVQCPRCKSFDTKFCYFNNYNVNQPRHFCRSCHRYWTNGGTMRNVAVGAGRRKNKHIASQYRHMIVASDGIPTASLETNDSSRYQHGSNLESAAVFRCSNDNGIVLKFGRENASLDESKGSMLNLMNNRRHVDASGNNCRENGEEETSLCVSSVTNGHTRGNELFESEQNRSKPMQSYPASSWIIPMNQRWNNVTSMVQSSMQMCNPYGIDPTAMQWCHAPMVAVTNIGLQFVPGSNRNGNVSIGSNGCISPSSSTTSNSCISGNGTPILGKHT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0788 368 PANTHER CYCLIC DOF FACTOR 3-LIKE 9 367 - -
Mtr6g0788 368 PANTHER CYCLIC DOF FACTOR 2 9 367 IPR045174 GO:0003700|GO:0006355
Mtr6g0788 368 MobiDBLite consensus disorder prediction 38 71 - -
Mtr6g0788 368 MobiDBLite consensus disorder prediction 38 56 - -
Mtr6g0788 368 Pfam Dof domain, zinc finger 93 150 IPR003851 GO:0003677|GO:0006355
Mtr6g0788 368 ProSitePatterns Zinc finger Dof-type signature. 98 134 IPR003851 GO:0003677|GO:0006355
Mtr6g0788 368 ProSiteProfiles Zinc finger Dof-type profile. 96 150 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0788 Mtr-Chr6 9939044 9941548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0788 7 171 C2C2-Dof Transcription Factor Family AT3G47500 42.077 3.13e-39 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr6g0788 zf-Dof 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0788 - - mtr:MTR_6g027460 722.235