Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0787 ATGAATGGTGAAGGTGACATCTGTGTTAAAAATTTTAGTATCATGCTCTTTGGTAAGAAGATTCAGCCCAACTCTTCAACCATGAATTCTTGCAGTAACTCAAAGCACAAAGGAAATGAAATGCCTCATATTCAAAACATTGAGAAATCAAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTTAACACAAGCACTGTGGAAGATAATATGGAGACAAGCAGCACAGATCAAGACAAAGTCTTAAAGAAACCCGACAAAATTGTTCAATGTCCAAGATGCAACAGTTTCGACACGAAATTTTGTTATTTCAATAACTATAATGTCAGTCAACCTCGGCATTTTTGTCGGAAATGTCATAGATATTGGACTGCCGGTGGAAAAATGAGAAACGTTCCTTTCGGTGCAGGGAGACGGAGGAACAAGCAGATAGCTTCTCAATATCGCCACATGATTGTAGCTTCCGGTGGAATTTCAACCTCAAATTTTGAAAGCAACGATTCTTCTACCGAATCTGCTGCGGTTTTCAGGTGCTCAAATAATAATGGTATTGTCCTAAAATTTGGTCCGGAAAATGAATCTAACGATTCGATCTTTAATCCTAACAACCACAAGAGAAATGTTGATGCAAATGCTAACAATTGTAGAGAAAATGGGGATGAAGAATCATCATTATGTCTATCTTCTCTGACAAACGGTTATACTCGAGGAAACGAGTTATCCGAATCCGAACATAATAGGTCAAAACCATTGCAGAATTACTCTGCATCTTCATGGATGATTCCACTGAATCAAAGCTTGAACAATGTTACTTCCATGGTTCAATCTTCAATGCAGATGTGTCACCCTTATGGCGTTGATCCTAGCTCAATGCAGTGGTGCCATATGCCGAACATTGGCTTGCAATTTGTTCCTGAATCATTTAAGAACGGATCAGTTTCAATAGGTTCAAATAATTGTATTTCGCCTTCTTCATCTACTACTAGCTAG 990 0.3778 MNGEGDICVKNFSIMLFGKKIQPNSSTMNSCSNSKHKGNEMPHIQNIEKSKNSSNEENESKVNTSTVEDNMETSSTDQDKVLKKPDKIVQCPRCNSFDTKFCYFNNYNVSQPRHFCRKCHRYWTAGGKMRNVPFGAGRRRNKQIASQYRHMIVASGGISTSNFESNDSSTESAAVFRCSNNNGIVLKFGPENESNDSIFNPNNHKRNVDANANNCRENGDEESSLCLSSLTNGYTRGNELSESEHNRSKPLQNYSASSWMIPLNQSLNNVTSMVQSSMQMCHPYGVDPSSMQWCHMPNIGLQFVPESFKNGSVSIGSNNCISPSSSTTS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0787 329 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677|GO:0006355
Mtr6g0787 329 Pfam Dof domain, zinc finger 86 143 IPR003851 GO:0003677|GO:0006355
Mtr6g0787 329 PANTHER CYCLIC DOF FACTOR 3-LIKE 19 324 - -
Mtr6g0787 329 PANTHER CYCLIC DOF FACTOR 2 19 324 IPR045174 GO:0003700|GO:0006355
Mtr6g0787 329 MobiDBLite consensus disorder prediction 23 81 - -
Mtr6g0787 329 MobiDBLite consensus disorder prediction 23 49 - -
Mtr6g0787 329 MobiDBLite consensus disorder prediction 57 72 - -
Mtr6g0787 329 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0787 Mtr-Chr6 9931782 9934939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0787 45 193 C2C2-Dof Transcription Factor Family AT3G47500 46.309 5.30e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr6g0787 zf-Dof 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0787 - - mtr:MTR_6g027450 672.159