Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0593 ATGAGAATGAGTTGTAATGGGTGTAGAGTTTTAAGAAAAGGGTGTAGTGAAGATTGTAGCATAAGACCATGTTTGGAATGGATCAAGTGTCCTCAATCACAAGCTAATGCTACTCTTTTTCTTGCTAAGTTTTATGGTCGTGCTGGTCTCATCAACCTCATCAATTCTGGTTCTGAAAATCTTCGTCCTGCAATTTTTCGTTCATTGCTCTATGAGGCTTGTGGGAGGATCGTGAACCCTATTTATGGGTCAGTGGGTCTTTTATGGTCTGGTAGCTGGCACCTCTGTCAAGCCGCTGTGGAAGCCGTTTTGAAGGGCGAGCCGATCACTCCGATAGATTCGGAGGCTGATGAAAATGAGAGGGGCCCACCATTCAAGGCCTATGACATACGCCACGTGTCAAAAGATGAGAACTTGGAGGAGACTAAGCAGGTTAGGACTCGGTCCCGGTTCAGACGAGCCATGAAGCCGAAGCCAAGCAAAGAAGTTGGGTCCGGTTCAGGGTCCAGCTCGGCCAAAGAAGTGGACCGGTCCAAAAGCCAAGAATCTTCGCTGAGCCAGCCGGGTAAAGATAGTGAAAGTGGGGTTTCTGTGGAGACTTCAATACTTTTTCATGATGAGTCGGAGTTTGAACCTGAGTCACAAGCTAAGGTAAAGGGTCGAGCTGAGGGCCGAGCTGAGGAAGGTCTGAGTGATGGGGTTGGCTTGGAGCTTAGGCTTGGTATCGAACCGGTGTCGCGTGAGGAGTTCATGGTTCCCATTAAGAAGAGGAAAATTGTGTTGAAGGATTGTAGTGCTTCCTCCAAGGTGGAGCTTGGGCTTGAACTTTCAGCTTAA 837 0.4827 MRMSCNGCRVLRKGCSEDCSIRPCLEWIKCPQSQANATLFLAKFYGRAGLINLINSGSENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVEAVLKGEPITPIDSEADENERGPPFKAYDIRHVSKDENLEETKQVRTRSRFRRAMKPKPSKEVGSGSGSSSAKEVDRSKSQESSLSQPGKDSESGVSVETSILFHDESEFEPESQAKVKGRAEGRAEEGLSDGVGLELRLGIEPVSREEFMVPIKKRKIVLKDCSASSKVELGLELSA* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0593 278 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Mtr6g0593 278 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 274 - -
Mtr6g0593 278 PIRSF AS2 1 278 IPR017414 -
Mtr6g0593 278 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 274 - -
Mtr6g0593 278 MobiDBLite consensus disorder prediction 111 230 - -
Mtr6g0593 278 MobiDBLite consensus disorder prediction 204 230 - -
Mtr6g0593 278 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Mtr6g0593 278 MobiDBLite consensus disorder prediction 111 148 - -
Mtr6g0593 278 MobiDBLite consensus disorder prediction 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0593 Mtr-Chr6 7168396 7170453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0593 1 274 AS2 family AT3G02550 52.482 5.16e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr6g0593 LOB 5.8e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0593 6 7168396 7170453 Mtr6g0593 6 7168396 7170453 ECH
Mtr1g4208 1 53731402 53732420 Mtr6g0593 6 7168396 7170453 ECH