Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g0304 ATGTCTGAAGCAAAAGACCCTGCGATCAAGTTGTTTGGGAAGACAATTCCGGTACCGGAGATCCCTACCGGATCCGGTGACTCTATTGGAGCACCGTCTTCATCTTCTGGTGATGCTGTGGATGATGGTATAAATCAAAACCATGGTTCTTTCATGGATGAAGAAGAGAGAGAGATTGATGAGGACACAATGGAAGATGAATCAACCAAATGTAAGAAGGAAAAAGATGAAGCTCTCACCCAATCATCAGAAAAGATCACTGATCTAGACACAAACTCGAGATTAGTGGAAGAATCAATTAACCCCTCCACTGAGGACGAGCAAAATACATTGAAAACTTCAAAGATTATGGAAGAACATACTGAGAATTCGCATGATAAGACCCTGAAAAAGCCAGACAAAATACTGCCGTGTCCCCGTTGTTATAGCATGGACACCAAATTCTGCTACTACAATAACTACAATGTTAACCAACCTCGCCATTTTTGCAAGAAATGCCAGAGATACTGGACTGCCGGGGGAGCCATGAGAAATGTGCCTGTAGGCGCCGGTCGTAGGAAGAACAAGAATTCTGCTTCTCACTTTCGCCAAATAACTGTACCTGAAACAGCTGTTCAGAATTCTCTATCCGACTCGCCAAACGGAGTCCATCATCCTTCACTAAACTGTAATGGCACAGTCTTTACATTCAGGACCGATACACCTTTGTGTGAATCAATGGAATCTGCATTGAACCTTGCTGATCAAGGAGTTAATATTTCCCAGAAAAATGGATTCATTAGACCGGAAGCACTGCGGATTCATGTACCCTATGTTGGGGAAGAAAAGAGTGATGAACATTCCATCAAATCTTCTGACACATCAACAACGCTGACAGAAGATGCAGCTGCCAGCAGTTCTGTTGAACAAGTTATGCCAAATTGTCAAAGCTTCCAACCACAAGTTCCGTACTATCCCAGTGCCCCTTGGCTTTTGCCGTGGAGTCCATCTCAATGGAGCTCTCAAGTACAACCACCGCCTGCTTTTTTCCCACAAGGATTTGCCATGCCACTCTATCCTCCACCGGCTTATTGGGGTTTTAGCATGCCCGGTGCGTGGAACAATCCATGGCTGGCACAACCTTCGTCACCAAATAGTGCAACCGTTAACTCCGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGAAGAAAGTATGCTCAAACCGACCGACTCCACAGGTTCTGACGAAGGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCGAAAACTTTGAGGATTGATGACTTGGGAGAAGCGGAAAAAAGCTCTATATTGACAACTCTCGGGATTAAAAACGATAAGGCAGACGCGATTCGTGGGGGAGGACTTTTCAAAGCCTTTGCTTCAAAGAGCAATGAAAAAGATAGCGTGCAAAACTCACCTGCCATGCAGGCCAATCCAGCAGCAATGTCTAGGTCAATTAGCTTTCATGAGACCTCATAA 1488 0.4476 MSEAKDPAIKLFGKTIPVPEIPTGSGDSIGAPSSSSGDAVDDGINQNHGSFMDEEEREIDEDTMEDESTKCKKEKDEALTQSSEKITDLDTNSRLVEESINPSTEDEQNTLKTSKIMEEHTENSHDKTLKKPDKILPCPRCYSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKNSASHFRQITVPETAVQNSLSDSPNGVHHPSLNCNGTVFTFRTDTPLCESMESALNLADQGVNISQKNGFIRPEALRIHVPYVGEEKSDEHSIKSSDTSTTLTEDAAASSSVEQVMPNCQSFQPQVPYYPSAPWLLPWSPSQWSSQVQPPPAFFPQGFAMPLYPPPAYWGFSMPGAWNNPWLAQPSSPNSATVNSGPNSPTLGKHSREESMLKPTDSTGSDEGNNKEEKSLWVPKTLRIDDLGEAEKSSILTTLGIKNDKADAIRGGGLFKAFASKSNEKDSVQNSPAMQANPAAMSRSISFHETS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g0304 495 MobiDBLite consensus disorder prediction 465 495 - -
Mtr6g0304 495 MobiDBLite consensus disorder prediction 27 43 - -
Mtr6g0304 495 PANTHER CYCLIC DOF FACTOR 2 1 494 IPR045174 GO:0003700|GO:0006355
Mtr6g0304 495 MobiDBLite consensus disorder prediction 64 83 - -
Mtr6g0304 495 MobiDBLite consensus disorder prediction 466 495 - -
Mtr6g0304 495 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Mtr6g0304 495 MobiDBLite consensus disorder prediction 395 418 - -
Mtr6g0304 495 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 494 - -
Mtr6g0304 495 Pfam Dof domain, zinc finger 133 190 IPR003851 GO:0003677|GO:0006355
Mtr6g0304 495 MobiDBLite consensus disorder prediction 374 418 - -
Mtr6g0304 495 MobiDBLite consensus disorder prediction 1 91 - -
Mtr6g0304 495 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Mtr6g0304 495 MobiDBLite consensus disorder prediction 374 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g0304 Mtr-Chr6 3712951 3716429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g0304 6 495 C2C2-Dof Transcription Factor Family AT5G39660 40.943 7.50e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr6g0304 zf-Dof 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g0304 - - aprc:113862693 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g0304 6 3712951 3716429 Mtr3g0908 3 13416096 13419006 ECH
Mtr6g0304 6 3712951 3716429 Mtr6g0304 6 3712951 3716429 ECH
Mtr7g0183 7 3056679 3060328 Mtr6g0304 6 3712951 3716429 ECH
Mtr5g1652 5 18117140 18119144 Mtr6g0304 6 3712951 3716429 ECH