Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3115 ATGGCTCCCTCATCTCTCTCCCCAAACTCCTTAGAGAACAACCTTGTGAGAGTTGAGGGTGGAAACATGGTCTCTCACATTACCACCACAAACAACAACAACAATGACACATTGATGCCCACACCAATACCATCACATCTCCCTCAAAAAAAGCCTAGGGGTAGACCCCCGGGATCTAAGAACAAGCCTAAACCACCTGTGAATATTGAGGAAAACATGGACAACAATATGAAAATGATTTACATTGAGATCCCCTCTGGAAAAGATATTGTGGGGGAAATAATCAATTGTGCTCATCGTTATCAAGCTAGCATAACAGTGTCGAGGGGTTACGGTCTTGTCACCAATGTTACCCTTCTCAATCCTAAAACTCATTTCCCAACTCCTCCTATGATAGGGCCATTTGAGATGACATCTCTCTTGGGAACATATGTTAATATCAATTGTCGTCGTAATACTCTCAATCATCCACCTTGTTCTTGTTTTTCCATTTTACTCTCAGGTCATGGTGCAGTGGTGTATGGTGGAACTGTTGGAGGAACAATTATTGCTGCTAGTAATGTTTGGATTCAAGCTACTCTCTGCAAGAATCTTGACCACTATCAATCAATCTCCAACAACAACAACAACCACGACAACAATGTTGTTAATTTGTCAACCTTTGATGACGTTGCAACTTTTCCGAATCACTAG 693 0.4156 MAPSSLSPNSLENNLVRVEGGNMVSHITTTNNNNNDTLMPTPIPSHLPQKKPRGRPPGSKNKPKPPVNIEENMDNNMKMIYIEIPSGKDIVGEIINCAHRYQASITVSRGYGLVTNVTLLNPKTHFPTPPMIGPFEMTSLLGTYVNINCRRNTLNHPPCSCFSILLSGHGAVVYGGTVGGTIIAASNVWIQATLCKNLDHYQSISNNNNNHDNNVVNLSTFDDVATFPNH* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3115 230 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 216 IPR014476 GO:0003680
Mtr5g3115 230 ProSiteProfiles PPC domain profile profile. 74 217 IPR005175 -
Mtr5g3115 230 Gene3D - 77 210 - -
Mtr5g3115 230 MobiDBLite consensus disorder prediction 25 71 - -
Mtr5g3115 230 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 200 - -
Mtr5g3115 230 CDD DUF296 78 184 IPR005175 -
Mtr5g3115 230 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 193 IPR005175 -
Mtr5g3115 230 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 216 - -
Mtr5g3115 230 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3115 Mtr-Chr5 39904361 39905053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3115 50 212 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.939 3.99e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3115 - - mtr:MTR_5g089090 404.06