Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2426 ATGGCGGGTGATAACACTCCTAACTCCATGAAAGAATCCTCAACGAACGTACCTTTGGAAGATGCACCATCATGCTTACAATACTTTGACCATCTGTTTTCTAGTGGAAAACTGGATGCTTTTGAGTCATTGAAAATGTCACGGCTAGCCGTAAGTCGAAACAAACAGAAACTTTTAGGAAAATGGCTAGCAGAGGATAAACTTGAATGCACTGAAGAGCTTGGTGACCTTGTGAAGAAAGTGGATAAAGACCTGGCATTGAAAATATATACTAAAGCAAGTGCCACACCAAAGGTTATTGCAGCTTTTGCTGAGAGGAGGGAATATGATAAGATTTTGACATACTCAAAGCAGGTTGGATACACTCTTGATTACATATTCCTTCTGCAAACAATATTGCAAACAGATGCCCAGGGTGCTCTAGATTTTGCTCTGATGATGTTGCGAATGGAGGGGGGTTGCCCTGTTGACTACAACAAAATAGCCGATCTGTTTCTTCAGAGGAATATGATCCGTGAGGCAACTACCTTTTTGTTGGAACTGCTGAAGCCAGACCTACCTGAACATGGACATCTTCAAACAAAGCTGCTGGAAATCAATCTTAAGACCTTTCCAAATGTTGCTGATTCTATATTGGCAAAAGGCGTGTTTAGTCATTATGATCGTCCACGTATTGCTAAACTTTGTGAAAAGGCCGGCCTTTTCATCCGGGCTCTTCAGCATTATACTGAGTTGCCTGACATCAAACGCATCATTGTGAAAACTGATGCCATTGAACATCAGGCTCTTGTTAAGTTTTTTGGAACCCTTCCTCGAAAATGGGCACTGGAGTGTATGGAACAACTTTTACTTGTCAACCTTGGGGGAAATCTTAAAATAATTGTGCAGACTTCCAAGGAATATTCGAAACAGCTGGGTGTTGATGCATGCATCAAACTCTTTGAGAAATTCAATTCTGATGAAGGATTATACCTTTTCTTGGGTGCACATTTGAGATCTAGTAAGAATCCTGACATTCACTTCAAGTACATTGAAGTAGCTGTTAAAACGGGACATATTACGGAGGTAGAGCGTGTAACCCGGGAATCATGCTATTATGATGCTGAGAAGACAAAGAACTTTCTAATGAAGACCAACCTTCCAAATGCACGGCCACTGATTAATGTGTGTGATCGTTTTGGTTTTGTTCCTCATCTCATACATTATCTCTATAGTCAAAACATGCTTCATTATGTTGAAGAATATGTTCAAAGGGTCAATCCTCAAAAGATTCCTCTAGTTGTAGGGCAGTTGTTAGATGATCGATGCCCTGAAAATTTCATTAAAGGTCTTGTACTTTCGATTCGTTCTCCTTTCCCAGTTGAGCCTTTAGTTGAAGAATTTGTAAAGAGGAATCGTCTTCGTTTGCTTACTCAGATCTTGGAGGATCTTGTGTGGGAGGGGAGCCGAGATGTACATGTGCATAATGCTCTTGGGAGAATCATCATTGACAGCAATAGCAATCCAGTACATTTTCTCACAACCAACCTATATTATGATTCTCGTGTTATTGGTAAATATTGTGAGCAAAGGGACCCAACACTTGCCGTTGTTGCTTACACAAGGGGGAAATGTGATTATGAGCTTGTTAATGTGACCAATAAAAATTCCTTGTTCAAACTCCAAGCCAGATATGTTATGGAACGGATGGATGGTGGCCTCTGGAAAGAGGTTCTAAATCCTGGGAACGTGTTTAGAAGACAGTTGATTGATCAAGTGGTGTCTACTGCTTTGCCTAAATGCAAGAGTCCTGACCAAGTTTCAGCTGCAGTGAAAGCTTTTATGACTGCCAATCTTACCCATGAAGTGATTGACCTTCTCGACAAGATTGTGCTACATAATTCTGCTTTTAGTGCAAACTTCACTCTAAAAAGCTTACTGATCCTTGCTGCAATAAAAGCAGATCCTTTAAGAGTCATGGGTTACATAAATAGGCTGGACAACTTTGATGGCTCTGCTGTCGGGAAGGCGGCAGTGGAAGCACGCTTATATGAAGAAGCTTTTGCCGTTTTCAAGAAATTTAATCTGAATGTTAAGGCTGTTAATGTTCTGCTAGATAACCTTAAGACCATTGATCGAGCTATGGAGTTTGCATTCTGCGTTGAAGAAGATTCTGTATGGAGCCAGGTGGCTAAGGCGAAACTAAGAAAAGGCTTAGTAAGTGATGCAATTGAGTTGTTCATCCGTGCAGATGATGCCACTCAGTTTTTAGAGGTTATAAAGGCTGCTGAAGTTGCAAATGTATACCATGACCTAGTAAAGTACCTTCTCATGGTTAGGCAGAAGACCAAAGAGCCCAAGGTGGACAGTGAGCTCATTTATGCGTATGCAAAGATTGGTCGGCTTGGAGAAATTGAAGAGTTTATTTTGATGCCAAATGTTTCTAATTTGCCAAATGTTGGAGACCGCTTGTATGCTGAGGCGCTTTATGAGGCTGCAAAAATTATATTTGCTTTTATCCCTGACTGGGCTAAGTTAGCAGTGACATTGGTGAAGCTTCAACAATTCCAAGATGCTGTTGATGCTGCTAAGAAAGCAAACAGTTTGAAAACATGGAAGGATGTTTGTTTTTCCTGCATTGATGCTGGGGAATCCTCCTTAGCTCAGATTTGTGGTCTCAATGTTATTGTTCAGGCGGACGATCTGGAAGAAGTTTGCAAGTATTATCAGAACAGAAGACGCTTCAATGAACTCATCTCTCTAATGGAGAAAGGGATAGAACTGGAGTGTGCTCATGAGAGTATCTTTACTGAGTTGGGAGTTCTTTACGCAAGATATCGTCCTGAGATGTTAATGGAGCACATTAAGTTGTTCTCAACCAACCTCAACAGTCTCAAGCTTTTTCAGGCGTGTGATGAACATCAACTCTGGAAAGAACTCACATACCTATATGTGCAATTTGAAGAGTTTAATAATGCTGCAATCACTGTAATGAATCACTCTCGAGAAGCATGGGACCACATGCAATTCAAACATATTATAGTAAATGTTGGTCGTGTAGAACTATATTATAAGGCTGTTCATTTCTACTTGCAAGAACATCCTGATATTATAAATGATCTTCTTAATGTGCTTGCCCGTCATGTGGAACATGCCCGTATTGTAGAAATAGCGCAGAAGGCAGGCCATATCCGATTGATAAAGCCGTACATGGTTGAAGTTCAAAGCAGCAATGTGTTTTCTATTAATGAAGCTTTGCATGAAATTTATGTTGACGAGGTGGACTACGATAGACTTCGTAAATCGATAGATCTGTATGACAACTTCAATCAGATAGGTCTTGCACAGAAGATTGAGAAGCACGAGCTCCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAAGCTGGAAGATGGAAACAGTCCATTTGTATGTTAAAGAAAGACAAACTTTACAAGGACTGCATGGAAACTTGCTATCAATCTGGTGACCAGAAACTCTCAGAGGATTTGCTTGTTTATTTTAGTGAGCAGGGGAAGAAAGAGTGTTTTGCATCGTGCCTCTCTACTTGTTATGATCTAATACGGCCAGATGTTGCATTAGAGCTAGCTTGGAAGAACAATATGATGGATTTTTCCTTCCCTTATCTCTTACAGTCTATTCGGGAATATACGAGCAAGGTAGATGAGCTTATAAAAGACAAAGTTGAAGCAGAAAATGAGAAGAAAGTTAAAGAAAAGGAGAGAAAGAACATTATTGCCCAACAGATTCCACCGGCATCAAGAATTTCTGTTCAAATTCGAAGCAAGTTCAGATTTTTATTTCAGAGCATCGAGCATTTCGTATCGAATATTTTTCACCAGGAGCGTTCAGATTGTTCTGTTCTGCACTACAGCATTGTTCTTCACCAGGGCTGCAACAATATTCTTCACCGTGGGCGTTCAGATTGTTCTGTTCAGCACATCATCCTCCAGAGGGAATACAAGGTCGCACACCGATTCCTTCATCAACAGATGGATGTGCGTCAAATGAATGAATCAGAACCTTGCAGCTCATCAATTGCAGGAAGTATGTGGAGGAAGGATATAGTGACTGTTGGCTTAGTTGATGGATAA 4098 0.4053 MAGDNTPNSMKESSTNVPLEDAPSCLQYFDHLFSSGKLDAFESLKMSRLAVSRNKQKLLGKWLAEDKLECTEELGDLVKKVDKDLALKIYTKASATPKVIAAFAERREYDKILTYSKQVGYTLDYIFLLQTILQTDAQGALDFALMMLRMEGGCPVDYNKIADLFLQRNMIREATTFLLELLKPDLPEHGHLQTKLLEINLKTFPNVADSILAKGVFSHYDRPRIAKLCEKAGLFIRALQHYTELPDIKRIIVKTDAIEHQALVKFFGTLPRKWALECMEQLLLVNLGGNLKIIVQTSKEYSKQLGVDACIKLFEKFNSDEGLYLFLGAHLRSSKNPDIHFKYIEVAVKTGHITEVERVTRESCYYDAEKTKNFLMKTNLPNARPLINVCDRFGFVPHLIHYLYSQNMLHYVEEYVQRVNPQKIPLVVGQLLDDRCPENFIKGLVLSIRSPFPVEPLVEEFVKRNRLRLLTQILEDLVWEGSRDVHVHNALGRIIIDSNSNPVHFLTTNLYYDSRVIGKYCEQRDPTLAVVAYTRGKCDYELVNVTNKNSLFKLQARYVMERMDGGLWKEVLNPGNVFRRQLIDQVVSTALPKCKSPDQVSAAVKAFMTANLTHEVIDLLDKIVLHNSAFSANFTLKSLLILAAIKADPLRVMGYINRLDNFDGSAVGKAAVEARLYEEAFAVFKKFNLNVKAVNVLLDNLKTIDRAMEFAFCVEEDSVWSQVAKAKLRKGLVSDAIELFIRADDATQFLEVIKAAEVANVYHDLVKYLLMVRQKTKEPKVDSELIYAYAKIGRLGEIEEFILMPNVSNLPNVGDRLYAEALYEAAKIIFAFIPDWAKLAVTLVKLQQFQDAVDAAKKANSLKTWKDVCFSCIDAGESSLAQICGLNVIVQADDLEEVCKYYQNRRRFNELISLMEKGIELECAHESIFTELGVLYARYRPEMLMEHIKLFSTNLNSLKLFQACDEHQLWKELTYLYVQFEEFNNAAITVMNHSREAWDHMQFKHIIVNVGRVELYYKAVHFYLQEHPDIINDLLNVLARHVEHARIVEIAQKAGHIRLIKPYMVEVQSSNVFSINEALHEIYVDEVDYDRLRKSIDLYDNFNQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSICMLKKDKLYKDCMETCYQSGDQKLSEDLLVYFSEQGKKECFASCLSTCYDLIRPDVALELAWKNNMMDFSFPYLLQSIREYTSKVDELIKDKVEAENEKKVKEKERKNIIAQQIPPASRISVQIRSKFRFLFQSIEHFVSNIFHQERSDCSVLHYSIVLHQGCNNILHRGRSDCSVQHIILQREYKVAHRFLHQQMDVRQMNESEPCSSSIAGSMWRKDIVTVGLVDG* 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2426 1365 PANTHER CLATHRIN HEAVY CHAIN RELATED 14 1250 - -
Mtr5g2426 1365 PANTHER CLATHRIN HEAVY CHAIN 14 1250 - -
Mtr5g2426 1365 SUPERFAMILY ARM repeat 794 1129 IPR016024 -
Mtr5g2426 1365 Coils Coil 1215 1249 - -
Mtr5g2426 1365 Gene3D - 5 105 IPR012331 -
Mtr5g2426 1365 SUPERFAMILY ARM repeat 500 670 IPR016024 -
Mtr5g2426 1365 Gene3D Tetratricopeptide repeat domain 794 1134 IPR011990 GO:0005515
Mtr5g2426 1365 Gene3D Tetratricopeptide repeat domain 650 793 IPR011990 GO:0005515
Mtr5g2426 1365 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 740 881 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 Pfam Region in Clathrin and VPS 886 1030 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 Pfam Region in Clathrin and VPS 300 438 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 Pfam Region in Clathrin and VPS 155 284 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 Pfam Region in Clathrin and VPS 448 573 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 Pfam Region in Clathrin and VPS 1038 1177 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 Pfam Region in Clathrin and VPS 743 878 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 Pfam Region in Clathrin and VPS 591 728 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 886 1032 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 149 295 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 591 736 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 SMART CLH_2 886 1032 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 SMART CLH_2 149 291 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 SMART CLH_2 445 584 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 SMART CLH_2 740 881 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 SMART CLH_2 591 736 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 SMART CLH_2 298 440 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 SMART CLH_2 1035 1194 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1035 1178 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 SUPERFAMILY ARM repeat 652 792 IPR016024 -
Mtr5g2426 1365 SUPERFAMILY ARM repeat 59 391 IPR016024 -
Mtr5g2426 1365 PIRSF CHC 6 1283 IPR016341 GO:0016192|GO:0032051|GO:0071439
Mtr5g2426 1365 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 298 440 IPR000547 GO:0006886|GO:0016192
Mtr5g2426 1365 Gene3D - 1140 1236 - -
Mtr5g2426 1365 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 445 584 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2426 Mtr-Chr5 31827038 31836206 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2426 5 31827038 31836206 Mtr5g2426 5 31827038 31836206 ECH
Mtr5g2426 5 31827038 31836206 Mtr3g1717 3 29327432 29338799 ECH