Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2346 ATGAAGAAATCAGCAAGCACCAATTTGCAATATCAGTCTAGTCAAAGAACAAAGAATTCTAATTTTCAACATAGTTCAGAAATTGATTCAACAAAGAAGCAGAATTCAGCACTGAAAAGTTTCAAATCTGTTGTCAAAATATTTGCTTTGATTTTCTCTGGCAGAAGAAAAACAGCTTCAAAAGTTATTGGAAATGATGACAGAAAAAATACATCAAAACCAAGATTGATGTTATCATCTTCAACTGATTTATCATCCGAAAGTAGTAACAAGAATTCTTCAAAATGGAGATTTTCTTCTTCCTATGCATCATCTAGTACTACAAGTGAACAGCTTGGAACTGGGAATTTCACTTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCTCAAGATAATCAAATTGGAGAAGGTGGATTTGGAACTGTCTATAGAGGAAAGCTTAATGATGGAACAATTGTCGCTGTGAAGCGCGCCAAGAAGGAAGCTTTGCAGAGTCACCTATATGAATTCAAGAATGAAATATACACTTTATCGAAAATTGAGCACCTGAATCTTGTGAGGTTATATGGATATTTGGAACATGGAGATGAGAAGCTTATTATTGTTGAGTATGTTGGGAATGGAAATCTTAGAGAACATTTAGATGGTATTCGGGGTGACGGACTAGAAATTGGTGAGCGTCTAGACATAGCAATCGATATAGCTCATGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATACATAGAGATATCAAAGCATCAAACATCCTAATTAGTGAGAATCTAAGGGCTAAAGTGGCAGACTTTGGTTTTGCAAGATTGTCCGAAGACCCTGGTGCAACTCATATTTCAACTCAAGTTAAAGGAACAGCTGGATATATGGATCCTGAGTACTTGAGAACTTATCAACTCACAGAAAAGAGTGATGTTTATTCATTTGGTGTATTGCTTGTTGAAATGATGACAGGAAGACATCCAGTTGAACCAAAGAAGAAAATTGATGAGAGAGTCACAATCAGATGGGCAATGAAGATGCTCAAGAACGGAGAAGCTGTGTTTGCAATGGATCCAAGACTGAGAAGAAGTCCAGCCTCCATCAAGGTAGTGAAGAAAGTTTTCAAGCTAGCTTTTCAATGCCTGGCACCTTCAATACATTCAAGGCCACCTATGAAGAATTGTGCAGAGGTTCTGTGGGGAATCCGTAAAGATTTTAAAGATGAAACCACTCCTCTTCCTACCTTACCTTCTCATCAATCTGAAAACTTTCCTCAAAGAGAAAAGAATAAGCATATAACATTTGGTATTGAAGATGATGACAGCTACAAATTTTCCTCTGCACCTAATCACATTCGTTCATGA 1371 0.3647 MKKSASTNLQYQSSQRTKNSNFQHSSEIDSTKKQNSALKSFKSVVKIFALIFSGRRKTASKVIGNDDRKNTSKPRLMLSSSTDLSSESSNKNSSKWRFSSSYASSSTTSEQLGTGNFTFEEIYKSTAKFSQDNQIGEGGFGTVYRGKLNDGTIVAVKRAKKEALQSHLYEFKNEIYTLSKIEHLNLVRLYGYLEHGDEKLIIVEYVGNGNLREHLDGIRGDGLEIGERLDIAIDIAHAITYLHMYTDNPIIHRDIKASNILISENLRAKVADFGFARLSEDPGATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPVEPKKKIDERVTIRWAMKMLKNGEAVFAMDPRLRRSPASIKVVKKVFKLAFQCLAPSIHSRPPMKNCAEVLWGIRKDFKDETTPLPTLPSHQSENFPQREKNKHITFGIEDDDSYKFSSAPNHIRS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2346 456 ProSitePatterns Protein kinases ATP-binding region signature. 135 161 IPR017441 GO:0005524
Mtr5g2346 456 SUPERFAMILY Protein kinase-like (PK-like) 104 405 IPR011009 -
Mtr5g2346 456 SMART serkin_6 129 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2346 456 CDD STKc_IRAK 135 401 - -
Mtr5g2346 456 Gene3D Transferase(Phosphotransferase) domain 1 206 415 - -
Mtr5g2346 456 PANTHER RECEPTOR-LIKE PROTEIN 55 19 431 - -
Mtr5g2346 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Mtr5g2346 456 ProSiteProfiles Protein kinase domain profile. 129 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2346 456 Gene3D Phosphorylase Kinase; domain 1 87 205 - -
Mtr5g2346 456 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1 19 431 - -
Mtr5g2346 456 MobiDBLite consensus disorder prediction 74 97 - -
Mtr5g2346 456 MobiDBLite consensus disorder prediction 62 97 - -
Mtr5g2346 456 Pfam Protein tyrosine and serine/threonine kinase 131 401 IPR001245 GO:0004672|GO:0006468
Mtr5g2346 456 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2346 Mtr-Chr5 30826721 30830381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2346 101 394 Receptor kinase-like Gene Family AT1G79620 42.525 3.30e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Mtr5g2346 PK_Tyr_Ser-Thr 1.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2346 - - gmx:100788236 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2346 5 30826721 30830381 Mtr5g2346 5 30826721 30830381 ECH
Mtr5g2346 5 30826721 30830381 Mtr3g1140 3 20421386 20425940 PCT