Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1952 ATGGCCACTGTTGCAACCAAAGGAATTGGAGTCACAAAGCTCCGTCCCTACAACCCCAACAAAAAATCCATCTTCCTTGGCCAAAGACTTAGAATCAAACCCTCAAACAATGAACAACCACCACAACCACCATGCAGTGCAAGATTCATCACCACAAAAGCCATTCATGGTGCTGAATGGCTTCTTGAATCAGCTCACAACCTATTTGTAGGTGTTGGTGTTGGACTTCCATGTACTGTTATGGAGTGTGGAGATATGATCTATAGAAGCACTCTTCCTAAGTCTAGTGGCTTGAATGTTACTGTCCCTGGTGTTGTTCTTGCTTTTGGTGCTTTGTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTTAGACCTACTTTCAGAAAGGATGATTTTGTTTTAGGGAAAAAGCTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGACACTAGCCAAGAAGCCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAACGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGGTCTACAAAGAAGACACCTGAATATTGGCTTATATGGAGGTTTGAAGGGGATGCTACCTTAGCCGATCTATTGCAGAGTAGAGATTTTCCATATAATGTCGAAACATTGATTCTTGGTGAGGTACAAGATTTGCCAAAGGGATTGGAAAGAGAAAATAAAATTATTCAAACAATCATAAGACAACTCTTGTTCGCATTAGACGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCGCAGAACATTATTTTCTCTGAAGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCTGCTACAGACTTGCGAGTTGGCATTAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAGTACATTATGAGCACACAAACTCCATCTGCACCCTCAGCTCCAGTTGCAACTGCACTCTCTCCAGTCTTATGGCAGTTGAATCTTCCCGACAGATTTGATATCTACAGTACTGGTCTAATATTCCTCCAAATGGCATTTCCTGGTTTACGCTCTGATAATAGCCTCATACAATTCAACCGTCAATTAAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTGGAGCCTCGATGTGGCGCTGAACTTAGGAGAGGCTTTGAGCTGTTGGATTTAGATGGCGGAATAGGATGGGAACTTTTGACGTCAATGGTCCGATATAAAGCAAGGCAAAGGCTGAGTGCTAAAGCAGCGTTAGCTCATCCTTACTTTGACAAAGAAGGCTTGTTGGCATTATCTATCATGCAAAATCTGAGGCTTAAGTTTTTTCGAGCAACAATACAGGATTATGGAGAAGCTGCCAAGTGGATTATTCAGCTTATGGCAAAATCAGGAACAGAAAAGGAGGGTGGATTCACTGAAGCTCAACTCCAGGAACTTAGAGAAATTGTGCCCAAGAAGAAGACCGGTGCACAAAGAAATGCTCTAGCTTCAGCTCTTAAAGTGCAAAGGAAAATTATAAAAACGTTAAATGAGAGTATGGATGAGCTCAGCAAAAACAGGAAAAGCATTTGGTGGAGGAGATGGATCCCAAGAGAGGAATGA 1728 0.4172 MATVATKGIGVTKLRPYNPNKKSIFLGQRLRIKPSNNEQPPQPPCSARFITTKAIHGAEWLLESAHNLFVGVGVGLPCTVMECGDMIYRSTLPKSSGLNVTVPGVVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVTLAKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWRFEGDATLADLLQSRDFPYNVETLILGEVQDLPKGLERENKIIQTIIRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPGLRSDNSLIQFNRQLKRCDYDLVAWRKTVEPRCGAELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGLLALSIMQNLRLKFFRATIQDYGEAAKWIIQLMAKSGTEKEGGFTEAQLQELREIVPKKKTGAQRNALASALKVQRKIIKTLNESMDELSKNRKSIWWRRWIPREE* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1952 575 Pfam Protein kinase domain 149 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1952 575 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 20 575 IPR044803 GO:0004674|GO:0009579
Mtr5g1952 575 Gene3D Phosphorylase Kinase; domain 1 134 227 - -
Mtr5g1952 575 CDD STKc_SNT7_plant 151 465 - -
Mtr5g1952 575 ProSitePatterns Protein kinases ATP-binding region signature. 153 180 IPR017441 GO:0005524
Mtr5g1952 575 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 20 575 - -
Mtr5g1952 575 SMART serkin_6 147 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1952 575 ProSiteProfiles Protein kinase domain profile. 147 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1952 575 Coils Coil 541 561 - -
Mtr5g1952 575 Gene3D Transferase(Phosphotransferase) domain 1 256 470 - -
Mtr5g1952 575 SUPERFAMILY Protein kinase-like (PK-like) 132 467 IPR011009 -
Mtr5g1952 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1952 Mtr-Chr5 24064059 24068856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1952 265 466 Core Cell Cycle Gene Families AT2G38620 30.986 2.14e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Mtr5g1952 Pkinase 2.7e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1952 5 24064059 24068856 Mtr5g1952 5 24064059 24068856 ECH