Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1831 ATGGGTAGGGGAAAGGTAGAGCTAAAGAGGATTGAGAACAAAATAAATCGTCAAGTTACATTTGCAAAGAGAAGAAATGGAATGCTGAAGAAGGCTTATGAACTCTCTCTCCTTTGTGATGCTGAGGTTGCTCTCATTATTTTCTCTAGCCGTGGAAAACTCTATGAGTTTTGCAGTGGAACTAGCATGGCCAAGACAATTGAACGGTATCAAAGATGCAGTTATGGAGCATTGGAAATAAACCACCAACCTGAAATTGAGACACAGAAGCGCTATCAAGAGTATATCAAGCTAAAATCAAAAGTTGAAGCACTACAGCAAACACAGAGGAACATTCTTGGAGAAGAATTGGAGCAGTTGGATATCAATGAGCTTGAGCAGATAGAACGTCAGGTAGACTCTTCCTTGAAGACAATCAGGTCAAACAAGACACAACATATGCTTGATCAACTTACGGACTTGCAAAAAAAGGAAGAGATGCTACTGGAAACTAATAATATTCTGAGGAATAAGTTGGAGGAAATTAATGTGACCCTTCAACCAACATGGGAATCTAGGGAGCAAAATGCAACCTATAGTGACCACCCTCACCAATCAGAGGGATACTATGAGAAAGCACGTTGCAATAGAACATTGCAAATTGGCTACAATTCTCAGGCGTTAAATGAATCAGGTGGAGATGCAGGAACCTCATCTCATACTGCCAATGACTTCATGCATGGATGGATGAACTGA 735 0.4054 MGRGKVELKRIENKINRQVTFAKRRNGMLKKAYELSLLCDAEVALIIFSSRGKLYEFCSGTSMAKTIERYQRCSYGALEINHQPEIETQKRYQEYIKLKSKVEALQQTQRNILGEELEQLDINELEQIERQVDSSLKTIRSNKTQHMLDQLTDLQKKEEMLLETNNILRNKLEEINVTLQPTWESREQNATYSDHPHQSEGYYEKARCNRTLQIGYNSQALNESGGDAGTSSHTANDFMHGWMN* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1831 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr5g1831 244 Coils Coil 151 174 - -
Mtr5g1831 244 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Mtr5g1831 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr5g1831 244 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g1831 244 PANTHER MADS BOX PROTEIN 1 230 - -
Mtr5g1831 244 MobiDBLite consensus disorder prediction 222 238 - -
Mtr5g1831 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mtr5g1831 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr5g1831 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g1831 244 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mtr5g1831 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr5g1831 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr5g1831 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr5g1831 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr5g1831 244 MobiDBLite consensus disorder prediction 222 244 - -
Mtr5g1831 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1831 Mtr-Chr5 20448831 20469961 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr5g1831 K-box 2.8e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1831 5 20448831 20469961 Mtr5g1831 5 20448831 20469961 ECH