Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr5g1738 | ATGGAGGATAGAGTTTGTAAGTATTGTTTGAAAAGATTTCCTTGTGGAAAATCTCTTGGTGGTCACATTAGGACTCATATGATGAGTGAAAATTCACTTCAATCTAATGAAGAGAAAAGAATGAATGCTAATGCTAGTGTTAATGCTATGTTTAAGTTTGATGAGGGAAGAAAGAGAAAGAGATTGGATTTAGGGTCTAATGGTGGTGGTAGTGGTGGTGATGATGGTAACCTTATTTATGGTCTTAGAGAGAATCCCAAGAAAACAACTAGGTTTGTGCACTCCAATGCTGCTGCTACTGTTCAGATGGAGAAATTCTGCAAAGAATGTGGAAAAGGTTTTCCATCATTGAAAGCACTGTGTGGTCACATGGCTTGTCACTCTGAGAAAGATAAGGGAGCTAATCGGATTGAAAGTGTGTCTGGTGTCCGTGAAAAGCAGAAATTGGTTATGGATAGTCAGTCTGATACCGAGGCTTCGGTTCAGACTGACTCAAGGAGATCAAGGAGGATGAAGTTCAAGAATCTTAGCGGCGGCGGTGGTGATAATAAGTCTTCATCTTCTCTTCATTGGGGAAATTGTTCTTCTTCGGTTTCGGAGGTTGAGCAGGAACAAGAAGATGTTGCTAGGTGTTTGATGCTGCTGTCTAGAGATTCTACTTATAAGGGTCGTTTTCCTTTGGTGACAGAATCTTCTGATAACAATTCAGTTGTTGTTGAAGAAAAATCACCTTCTGTTGATACCAAGTTTGCTGTTATGAACCGTGGTAAGAACATTGTTGGCGCTAAAAACAATGGTTTTGAGCTTGCTGAGAAGAAGCTGAACAAAGACGGGAAGATGAAATCGGTCGAAATTGGTTATGTTTCTGATAATTCGGATTCTGGATACTTCACTTATGGTCCTAAAAAAGTAGAATCAGATGATTCAAGTGATGGTTTTTTCAGGAATGATGCTAAGTCTTCAAAAGTTGGATACTTTTCTAGTTTCCAGGATCATGATTTTGAATCAAGCAAGAAGATAATAAGCAGAGGAAGAAACAGAAACAGTGCTGAATTCAAGAAAGTAGTTTTGGAAAATTCTAGCAAGAAAACAAAAAATGGTTATAACAATGAAGTGTATGAGAGTTTGAAGATTGATAGAGAAAGTTATTCTGAAGATTCAGCTTATGAGAGTGATGAAAACAGCTCAGAAAGTGATTCTTATCCTGCTCCAAAGGCACAAAGCAATAAGAACATGAATGGAAAAACTAATAAGAAGTCAAGTTACAAAGGAAAGAAGAAAATGAAGTCAAAGAAAAGCAAAGAACATGAATGTCCAATTTGCAACAAGATTTTCAAGTCAGGACAAGCTTTAGGGGGTCACAAAAGATCCCATTTTATTGGAGGAAATGATGATAACACTCTTGTGATTAGACCAGCTGCTGCTGCTCATGCTCATGCTGCTCCTGCTGCTCATGCTCATGCTGCTCCTGCACCTCCTGCTTTTGCTGCTGCTGCTAATCCATCTTTATTTGATCTTAATCTACCTGCTCCTGATGATGAATAA | 1545 | 0.3858 | MEDRVCKYCLKRFPCGKSLGGHIRTHMMSENSLQSNEEKRMNANASVNAMFKFDEGRKRKRLDLGSNGGGSGGDDGNLIYGLRENPKKTTRFVHSNAAATVQMEKFCKECGKGFPSLKALCGHMACHSEKDKGANRIESVSGVREKQKLVMDSQSDTEASVQTDSRRSRRMKFKNLSGGGGDNKSSSSLHWGNCSSSVSEVEQEQEDVARCLMLLSRDSTYKGRFPLVTESSDNNSVVVEEKSPSVDTKFAVMNRGKNIVGAKNNGFELAEKKLNKDGKMKSVEIGYVSDNSDSGYFTYGPKKVESDDSSDGFFRNDAKSSKVGYFSSFQDHDFESSKKIISRGRNRNSAEFKKVVLENSSKKTKNGYNNEVYESLKIDRESYSEDSAYESDENSSESDSYPAPKAQSNKNMNGKTNKKSSYKGKKKMKSKKSKEHECPICNKIFKSGQALGGHKRSHFIGGNDDNTLVIRPAAAAHAHAAPAAHAHAAPAPPAFAAAANPSLFDLNLPAPDDE* | 515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr5g1738 | 514 | Pfam | C2H2-type zinc finger | 5 | 27 | - | - | |
| Mtr5g1738 | 514 | Pfam | C2H2-type zinc finger | 436 | 458 | - | - | |
| Mtr5g1738 | 514 | Pfam | C2H2-type zinc finger | 107 | 129 | - | - | |
| Mtr5g1738 | 514 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
| Mtr5g1738 | 514 | Gene3D | Classic Zinc Finger | 92 | 166 | - | - | |
| Mtr5g1738 | 514 | SUPERFAMILY | beta-beta-alpha zinc fingers | 106 | 458 | IPR036236 | - | |
| Mtr5g1738 | 514 | MobiDBLite | consensus disorder prediction | 394 | 418 | - | - | |
| Mtr5g1738 | 514 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 4 | 514 | - | - | |
| Mtr5g1738 | 514 | MobiDBLite | consensus disorder prediction | 141 | 193 | - | - | |
| Mtr5g1738 | 514 | MobiDBLite | consensus disorder prediction | 179 | 193 | - | - | |
| Mtr5g1738 | 514 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 438 | 458 | IPR013087 | - | |
| Mtr5g1738 | 514 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 107 | 127 | IPR013087 | - | |
| Mtr5g1738 | 514 | MobiDBLite | consensus disorder prediction | 383 | 435 | - | - | |
| Mtr5g1738 | 514 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 4 | 514 | - | - | |
| Mtr5g1738 | 514 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
| Mtr5g1738 | 514 | SMART | c2h2final6 | 436 | 458 | IPR013087 | - | |
| Mtr5g1738 | 514 | SMART | c2h2final6 | 105 | 127 | IPR013087 | - | |
| Mtr5g1738 | 514 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 436 | 458 | IPR013087 | - | |
| Mtr5g1738 | 514 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 105 | 132 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr5g1738 | Mtr-Chr5 | 19224850 | 19227174 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Mtr5g1738 | zf-C2H2_6 | 3.6e-10 | CL0361 |
Event-related genes