Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1716 ATGACACTTTACATGCCATTGTTCAGAACATGTTCAACTCTACGCCGTCTCACACAACTCCACGCTCACCTCGTTGTCACTTCACTCCACAACAACCCACTTGCATCCACAAAGCTTCTCGAATCATACTCCCAAATGGGTTCTCTTCAATCATCAAGACTCGTTTTTTACACACACCCTTCACCTGATTCCTTCATGTTTAGCGTCCTCATCAAATGCCATCTATGGAATCATCTTTTTCGCGAAGTTCTTTCACTTTTCAATCATCACATTCAAATGGGTTCCAAATTGACGCAAAATTGTGCTTTTTTGTATCCTTCTGTTATTAGAGCTGTTACTGGTGTTGGTGAGTTGATTGTTGGAAGGAAGTTACATGGAAGGATTTTGAAATCTGGGTTTTGTGAGGATCGCGTTATTGGGACTTCGTTGGTTGGAATGTATGGGGAGTTATGTTTTTTAAGGGATGCGAAGAAAGTGTTCGATGAAATGTGTGTGAGAGATTTGGTTTTATGGAGTTCGATTATATCGTGTTATGTTGAGAATGGGGTTTATAGAGAAGGGTTAGAGATGTTTCGTTCGATGATTTGTGAAGGGATTAGACCGGATTCGGTTATGTTGTTAAGTGTAGCGGAGGCTTGTGGGAAAATTGGTTGTTTGAGGTTGGCAAAATCGGTTCATGGATATGTGATGAGAGAAGGGATGGTTGGTGATGGGAGTTTGAGCAATTCGCTTATTGTTATGTATAGTCAGTGTGGTTACTTGTGTAGAGCGAAAAGGTTGTTTGAATGTATTGATGATCGAAGTACTTCGTGTTGGACTTCTATGATTTCGGCGTATAATCAAAATGAGTGTTTTGAAGAGGCGTTGGATGTTTTTATTAAGATGCAAGATTCGGAGGTGGAACCGAATGACGTGACAATGATTAGTGTTCTAAATTCGTGTGCTAGATTAGGTAGGTTAAAAGAGGGGAAATCGGTTCATTGCTTTGTTTTAAGGAATGCAATGGGTGTTACTGGTCTTGATCTTGGGCCTGCACTAATAGATTTCTATTCAGCGTGCTGGAAAATGAGTAGTTGTGAAAAGCTTCTTCATTCAATAGGAAACGAAAACATTGTATCGTGGAATACACTAATATCATTTTATGCTCGAGAGGGTTTAAATGATGAAGCCATGGCATTCTTTGCGTGTATGGTGGCTAAGGGGATAATGCCAGACTCATTTAGCTTAGCAAGTTCAATTTCAGCAAGTGCAAGTTCTGGTTCAATACAATTTGGACAGCAGATACATGGTCATGTCATGAAAAGAGGTTTCTTTGATGAATTTGTTCAGAATTCTTTGATGGATATGTATTCAAAATGTGGCTTTGCGAGTTCAGCATACACAATTTTTAACAAGATCAAGCACAAAAGCATTGTGGCATGGAACTGTATGATTTGTGGGTTTTCTCAGAATGGAATTTCAGTAGAAGCACTCAGCCTATTTGATGAGATGTTCAAAAATCGCCTCGAGATTAACAAAGTAACCTTTTTAAGTGCAATTCAAGCTTGCTCCAATTTGGGTTATCTTGACAAGGGAAAATGGATTCACCATAAGATCATCGTAACTGGTAATCAGAATGATCTATATATCGATACAGCTTTGGTCGACATGTATGCAAAGTGTGGAGACCTTCAAACAGCCCAAAAAGTTTTCGATAGCATAGTCGAGAAAAGTGTGGTGTCATGGAGTACCATGATTGCTGCTCATGGCATACATGGTCAAATAAATGCTGCCACCTCACTCTTCCATAAGATGGTTCTCTCAAATATCAAACCGAATGAAGTAACCTTCATGAATATCTTATCTGCCTGCAGGCATGCCGGATCAGTAAAGGAAGGGAAGTTTTATTTTAACACTATGAGGGATTATTATGGCATAGTGCCTAATGTAGAACATTTTGCCTCCATAGTTGACCTTCTAAGTCGTGCCGGTGATATCAACGGAGCCTATGAAATAATTAAATCGATACGCACGCCAGTGGCTGCTAGCATATGGGGAGCTTTACTTAATGGTTGTCGGATATACGGGAGGATGGACATGATTGAGTACATCGCTGAAGAACTCGGAGGAATAAGTACAGATGATACAGGGTACTATACTTTGTTATCTAACATATATGCTGAAGGAGGAAACTGGTATGAATCAAGAAAGGTGAGATCAAAGATGGAAGGAATGGGCCTGAAAAAGGTACCTGGGTACAGTACAGTTGAGATAGATAGGAAAATCTATAGATTTGGATCTGGAGATACTTCTGAATGGCAAATGAAAGAAATTTGCATGTTTTTAGAAAATTTTCAAAGCTTGGCACAGGAACAAGGATCTGATGTAGAATGCTTTATGTTTAACAATACTACTACTAGAGGTGGTGTGTTTTTTGATGATTTTAGTGTATATAACTTGCAGAGAGAAGCTAGCAATCACATTGGGAATAAATCAGTCCTACTTTAG 2487 0.3924 MTLYMPLFRTCSTLRRLTQLHAHLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGFFDEFVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNIKPNEVTFMNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRTPVAASIWGALLNGCRIYGRMDMIEYIAEELGGISTDDTGYYTLLSNIYAEGGNWYESRKVRSKMEGMGLKKVPGYSTVEIDRKIYRFGSGDTSEWQMKEICMFLENFQSLAQEQGSDVECFMFNNTTTRGGVFFDDFSVYNLQREASNHIGNKSVLL* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1716 828 Gene3D Tetratricopeptide repeat domain 544 754 IPR011990 GO:0005515
Mtr5g1716 828 Pfam E motif 692 750 IPR046848 -
Mtr5g1716 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Mtr5g1716 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Mtr5g1716 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Mtr5g1716 828 Gene3D Tetratricopeptide repeat domain 220 338 IPR011990 GO:0005515
Mtr5g1716 828 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 276 - -
Mtr5g1716 828 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 401 777 - -
Mtr5g1716 828 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 272 404 - -
Mtr5g1716 828 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 401 777 - -
Mtr5g1716 828 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 272 404 - -
Mtr5g1716 828 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 276 - -
Mtr5g1716 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Mtr5g1716 828 Pfam PPR repeat family 469 517 IPR002885 -
Mtr5g1716 828 Pfam PPR repeat family 570 617 IPR002885 -
Mtr5g1716 828 Pfam PPR repeat family 268 316 IPR002885 -
Mtr5g1716 828 Pfam PPR repeat family 370 408 IPR002885 -
Mtr5g1716 828 Pfam PPR repeat 141 166 IPR002885 -
Mtr5g1716 828 Pfam PPR repeat 169 199 IPR002885 -
Mtr5g1716 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Mtr5g1716 828 TIGRFAM PPR: pentatricopeptide repeat domain 169 203 IPR002885 -
Mtr5g1716 828 TIGRFAM PPR: pentatricopeptide repeat domain 472 505 IPR002885 -
Mtr5g1716 828 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Mtr5g1716 828 TIGRFAM PPR: pentatricopeptide repeat domain 573 607 IPR002885 -
Mtr5g1716 828 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Mtr5g1716 828 Gene3D Tetratricopeptide repeat domain 341 435 IPR011990 GO:0005515
Mtr5g1716 828 Gene3D Tetratricopeptide repeat domain 91 219 IPR011990 GO:0005515
Mtr5g1716 828 Gene3D Tetratricopeptide repeat domain 436 525 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1716 Mtr-Chr5 19030107 19032843 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1716 5 19030107 19032843 Mtr5g1716 5 19030107 19032843 ECH