Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1655 ATGACTAATGATTCAACCATAAAGCTTTTCGGGAGAACCATTTTTCAAACACACAACACCGATGTTACTACCAATGATTTTTCCTCAGAGTTAGAGTTTGGTTCTCCTCTCCCTCGCGACGATTCCTCTGATCATAGTCCTTATTCATCTTCATGTTCCCCATCTGAAGTGAATTCTCCAACTGAACATGATGCAAAGAGATATAAGGAAACATCAAGGAAAGAACTCACATCAGTTCAAGAGGATGAGGCCTCATTCCAAACTACAGAGGATTCAAAATCTCACACACCTTCAAGCCATGTTGAGAACCCAAAATCTCCCTCGTCGGAAACAGAAACTTCTGAACTGAATTCCCATAAGATTGATGAACAAAGTGATATGTCACAAGAGAAATCTCCAATGAAACAAGACGTAATTGTTCCCTGTCCAAGATGCAAAAGCATGGACACAAAATTTTGTTACTATAACAACTACAACGTCAAACAGCCCCGACACTTCTGCAAAAACTGCCAGAGGTATTGGACTTCCGGAGGAGCCACGAGAAATATGATTGTAGGTGCAGGTCGTCGCAAGAACAAACTCAATGCAGCCAATGGATTGCATAGTACTACTATCTTGACCTTTGGATCAGATTCTCCTAGTATGTCTTCAACTTCACTCGACAAGAAAGTGAATGTTGCATCACATGAAGAAACATTTGATAAGAGTTATCAAAGTTTTCCTCCACAGTTTCCTTGGAACCCTGCAATGTGTTACCCTATGTCATTCTGTCCCGATATAGCATACTATGGTGGTTGTTTGGTACCATCATGGAATGTACAATCTTGTGGTCAAAATTCAACTACATTAGGGAAACATTCAAGAGATGGGAACATTCTCTTGCATTCCAAATCAGAGAAAGAAAAACTTGGATCAGAAAGATGTAATAAGCGCGTGTTGATCCCTAAGACGCTGAGAATTGATGATCCTAATGAAATAGCAAAGAGTTCTATATGGTCAACACTTGGAATCAAGAATGGGGGAGAGCTTTTCATGGGATTTGCATCTAAGGGGGGAGTCAAGAATCATGTACAAACATCCTCATCAGTTTTGCAAGCTAATCCTGTAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGGATTTGA 1146 0.4023 MTNDSTIKLFGRTIFQTHNTDVTTNDFSSELEFGSPLPRDDSSDHSPYSSSCSPSEVNSPTEHDAKRYKETSRKELTSVQEDEASFQTTEDSKSHTPSSHVENPKSPSSETETSELNSHKIDEQSDMSQEKSPMKQDVIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGATRNMIVGAGRRKNKLNAANGLHSTTILTFGSDSPSMSSTSLDKKVNVASHEETFDKSYQSFPPQFPWNPAMCYPMSFCPDIAYYGGCLVPSWNVQSCGQNSTTLGKHSRDGNILLHSKSEKEKLGSERCNKRVLIPKTLRIDDPNEIAKSSIWSTLGIKNGGELFMGFASKGGVKNHVQTSSSVLQANPVALSRSLVFHERI* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1655 381 MobiDBLite consensus disorder prediction 18 135 - -
Mtr5g1655 381 Pfam Dof domain, zinc finger 139 193 IPR003851 GO:0003677|GO:0006355
Mtr5g1655 381 MobiDBLite consensus disorder prediction 42 59 - -
Mtr5g1655 381 ProSiteProfiles Zinc finger Dof-type profile. 140 194 IPR003851 GO:0003677|GO:0006355
Mtr5g1655 381 PANTHER CYCLIC DOF FACTOR 1 216 380 - -
Mtr5g1655 381 PANTHER CYCLIC DOF FACTOR 1 2 205 - -
Mtr5g1655 381 MobiDBLite consensus disorder prediction 81 114 - -
Mtr5g1655 381 MobiDBLite consensus disorder prediction 115 130 - -
Mtr5g1655 381 MobiDBLite consensus disorder prediction 60 80 - -
Mtr5g1655 381 ProSitePatterns Zinc finger Dof-type signature. 142 178 IPR003851 GO:0003677|GO:0006355
Mtr5g1655 381 PANTHER CYCLIC DOF FACTOR 2 216 380 IPR045174 GO:0003700|GO:0006355
Mtr5g1655 381 PANTHER CYCLIC DOF FACTOR 2 2 205 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1655 Mtr-Chr5 18153754 18157904 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1655 112 381 C2C2-Dof Transcription Factor Family AT5G62430 45.486 2.94e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr5g1655 zf-Dof 5.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1655 - - mtr:MTR_5g041530 744.191