Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1653 ATGATTAATAATTCAACCATAACGCTTTTTGGGAGAACGATTTTTATAACACACAACATCGATGTATCTACCAATGATTCTTCCTCAGAGTCAGAATTTTCTCCGCTTCCTCATGAAGATTTATCTCATCATAGTCTTCATTCATCTATGTCTTCCTCTTCTCCACTTGAAGTGAATTCTTCAACTGAACATGATGCAAAGAGATATAAGGAAACATCAAGAAAAGAACTCATCGAGGATGAGGCTTCATTCCAAACCACAGAGGATTCAGAATCTCCCACATCTTCAAGCCTTATCGAGAACCCGAAAACTCCCTCATCTGAAACAGAGACGTCTCAAGCAAATTCCACTAAAATTGATGAACAAACTGATATGTCACAAGAAAAATCTCCAAAGAAACCAGACCAAGTTGTTCCATGTCCAAGATGCAAAAGCACGGACACAAAATTTTGCTACTACAACAACTACAACGTCAAACAGCCTCGACACTTCTGCAAAAATTGCCAAAGATACTGGACTTCTGGAGGAACCACGAGAAATATGCTTATAGGGGCAGGTCGTCGCAAGAACAAAGTCTCTTCTTCTTTTAATTCTGATGCCTCGCATTATCATCAAATGAGTACTGTCTTGACCTTTGGATCGGATTCTCCTATCATGTCTTCAAGTTCACTTGACAAAAAAGGGAATGTTGGTTCACTTGAAAAAACATTTGACAAGAGTTATCAAAGTTTTCCTCAACAGATTCCATGGAATCCTGCTATGTGTTATCCTGTGCCAATCTATCCAAATATAGCATTCTGTGGTGGTTGTTTGATACCATCTTGGAGCGTGCAATCTATCTCAACACAGTTTGATGAACCAAATAAACTAACTTTAGGGAAACATTCGAGAGATGGACGACTTTCCAAGGGTTTTGCTTCTAACCCTGCAGCTTTATCAAGGTCACTTTTGTTCCATGAGATGATTTGA 969 0.3891 MINNSTITLFGRTIFITHNIDVSTNDSSSESEFSPLPHEDLSHHSLHSSMSSSSPLEVNSSTEHDAKRYKETSRKELIEDEASFQTTEDSESPTSSSLIENPKTPSSETETSQANSTKIDEQTDMSQEKSPKKPDQVVPCPRCKSTDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGTTRNMLIGAGRRKNKVSSSFNSDASHYHQMSTVLTFGSDSPIMSSSSLDKKGNVGSLEKTFDKSYQSFPQQIPWNPAMCYPVPIYPNIAFCGGCLIPSWSVQSISTQFDEPNKLTLGKHSRDGRLSKGFASNPAALSRSLLFHEMI* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1653 322 MobiDBLite consensus disorder prediction 87 121 - -
Mtr5g1653 322 Pfam Dof domain, zinc finger 135 191 IPR003851 GO:0003677|GO:0006355
Mtr5g1653 322 ProSitePatterns Zinc finger Dof-type signature. 140 176 IPR003851 GO:0003677|GO:0006355
Mtr5g1653 322 MobiDBLite consensus disorder prediction 61 82 - -
Mtr5g1653 322 ProSiteProfiles Zinc finger Dof-type profile. 138 192 IPR003851 GO:0003677|GO:0006355
Mtr5g1653 322 PANTHER CYCLIC DOF FACTOR 1 2 207 - -
Mtr5g1653 322 PANTHER CYCLIC DOF FACTOR 1 233 302 - -
Mtr5g1653 322 PANTHER CYCLIC DOF FACTOR 2 233 302 IPR045174 GO:0003700|GO:0006355
Mtr5g1653 322 PANTHER CYCLIC DOF FACTOR 2 2 207 IPR045174 GO:0003700|GO:0006355
Mtr5g1653 322 MobiDBLite consensus disorder prediction 24 140 - -
Mtr5g1653 322 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1653 Mtr-Chr5 18121546 18123726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1653 106 298 C2C2-Dof Transcription Factor Family AT5G62430 42.381 1.05e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr5g1653 zf-Dof 4.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1653 - - mtr:MTR_5g041420 595.119