Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1652 ATGACTAATGATTCAACCATAAAGCTTTTCGGGAGAACAATTTTTCAAACACGCAACACCGACGATTATTCCTCGGAGTTTTCTCCTCCTCTTGGTCATGAAGATTTCTCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCATCTTCTCCAAACGAACATGATTCAAAGAGATATAAGGAATCATCAAGGAAAGAACCCACCTCAGTACTTGATTATGAAGAAGCCTCAAAACAAACCACAGAGGATTTAAACACTCCCACCACATCAGAAACAAAAACTTCTCAACTGAATTCAACTAAAGTTGATGAACAAAGTGATATTTCCCAGGACAAAGCTCCAAACAAATTTCTTCCATGTCCAAGATGCAAAAGCGTAGACACAAAATTTTGTTACTACAATAATTACAACGCCAACCAGCCCCGACACTTCTGCAAAAACTGTCAGAGATATTGGACTGCCGGAGGAACCACTAGAAGTATGCTTGTAGGTGCAGGTCGCCGCAAGAACAAAATCTCTTCTTTTTCTTCCGATGCCTCACATAATCGTCAAATGAGTACTGTCTTGACCTTTGGATCAGATTCTCCTGTTATGTCTTCAACTTCACTTGCCACGAAAATGAATGTTGGATCAGATGATGAAATATCTGATAAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCATGGAACCCAGCAATGTGTTATCCTGTGTCATTCCAACCCAATATAGCTTACTATGGTGGTTGTTTAGTCCCATCATGGAGCGTACAACCTATCACAACTCAATCTCGTGTTCCAAGTAAACCTACTTTAGGGAAACATTCAAGAGATGACTTAGAAAATAACGAGAAAGAAAGTGATAATAATAGTGTGTTGATTCCCAAGACATTGAGAATTGAAGACCCTAATGAAGCTGCAAAGGGTTCTAATTGGTTAACACTAGGAATCAAGAATGGCGGAAGATTTTTCAATGGATTTGCATCTACGGGTGGTGATAAGAATCATGTGGTTGAAGCAAACTCATTAGCATTGAAAGCCAATCCTGCAGCTTTATCAAGGTCTCTTGTGTTTCATGAGAGGATTTGA 1092 0.3883 MTNDSTIKLFGRTIFQTRNTDDYSSEFSPPLGHEDFSDHSLHSSLSSSSSSPNEHDSKRYKESSRKEPTSVLDYEEASKQTTEDLNTPTTSETKTSQLNSTKVDEQSDISQDKAPNKFLPCPRCKSVDTKFCYYNNYNANQPRHFCKNCQRYWTAGGTTRSMLVGAGRRKNKISSFSSDASHNRQMSTVLTFGSDSPVMSSTSLATKMNVGSDDEISDKSNQCFFPQQFPWNPAMCYPVSFQPNIAYYGGCLVPSWSVQPITTQSRVPSKPTLGKHSRDDLENNEKESDNNSVLIPKTLRIEDPNEAAKGSNWLTLGIKNGGRFFNGFASTGGDKNHVVEANSLALKANPAALSRSLVFHERI* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1652 363 MobiDBLite consensus disorder prediction 81 105 - -
Mtr5g1652 363 MobiDBLite consensus disorder prediction 14 115 - -
Mtr5g1652 363 MobiDBLite consensus disorder prediction 54 80 - -
Mtr5g1652 363 Pfam Dof domain, zinc finger 118 172 IPR003851 GO:0003677|GO:0006355
Mtr5g1652 363 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
Mtr5g1652 363 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
Mtr5g1652 363 MobiDBLite consensus disorder prediction 272 287 - -
Mtr5g1652 363 PANTHER CYCLIC DOF FACTOR 2 2 187 IPR045174 GO:0003700|GO:0006355
Mtr5g1652 363 PANTHER CYCLIC DOF FACTOR 2 203 362 IPR045174 GO:0003700|GO:0006355
Mtr5g1652 363 PANTHER CYCLIC DOF FACTOR 1 2 187 - -
Mtr5g1652 363 PANTHER CYCLIC DOF FACTOR 1 203 362 - -
Mtr5g1652 363 MobiDBLite consensus disorder prediction 264 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1652 Mtr-Chr5 18117140 18119144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1652 92 363 C2C2-Dof Transcription Factor Family AT5G62430 47.038 2.35e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr5g1652 zf-Dof 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1652 - - mtr:MTR_5g041530 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1652 5 18117140 18119144 Mtr5g1652 5 18117140 18119144 ECH
Mtr5g1652 5 18117140 18119144 Mtr3g0908 3 13416096 13419006 ECH
Mtr5g1652 5 18117140 18119144 Mtr7g0183 7 3056679 3060328 ECH
Mtr5g1652 5 18117140 18119144 Mtr6g0304 6 3712951 3716429 ECH