Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1299 ATGTCACAAAATGAAACACAAACCTCAAAATCTCCAAAAGAAAAAAACAATAACCAGCAAGGTTCTGTTGGTAAGAAAACATCTTCATCATCTTCTACCTCAACAACAAAACCACCAGAACAAAACATGAAGTGTCCAAGATGTGACTCACCCAACACAAAATTCTGCTACTACAACAACTATAGCTTAACACAACCAAGACATTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGTGGAGCTTTACGCAACGTTCCAATCGGTGGTGGATGTAGAAAAAACAAGAAAATGAAATCATCATCATCAAGACTCTCTTGTGATTCAAAAGACTCAGCTTCTTCTTCTTCAGAGCTTGTTGGTGGCTTGAAATTTCTTCATTCTCTTTCTTCTCCTTCCATGGATTTTCATCTTGGTAGTGGTTTATCTTTTCCAAGACTTCAACTTCATAATCACCCTCAAATTTCTACTACTCCTATGTATAACCAGTTTTCATCTTTTGGAGAAACTTCTTCTGCTATGAATAATAACTATCATGCTTCTTCAAATTCTGCTGCTGCTATGAACTATCCTTTTTCATCAGGTAATTATAATGGTGCAATACAAGGTATGAGTTCAATGAATATTAATCATAGCAATAATAATATTGCTTCTTCTATTGAATCATTGAGTTCTATGAACCAAGACTTGCACTGGAAGCTACAGCAACAAAGATTATCTATGCTTTTTGGTGGTGGAGAAAATCAGAAAGATACAGAAAAGCCACTACAACCCATTTTGTTTCAGAATCTTGAGGTTGCAAAGCAAGATGATAGAGCTTTTTCTGTTGGAAATTCAAGAACAAATGGTGGAGATACAGCAACTGAGTGGTTTTTTGGGAATTCTTATGGTTCAGCTGCTGCTACACCAACTGCAAGTGGTGGAGCTGGACATGATAGTGGAAGCAACTGGAATGGTGGTGGTGTTCATGGTTGGAATGATGTGCAACAGCAATATAGTGCTTTGCCCTAG 1011 0.3709 MSQNETQTSKSPKEKNNNQQGSVGKKTSSSSSTSTTKPPEQNMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMKSSSSRLSCDSKDSASSSSELVGGLKFLHSLSSPSMDFHLGSGLSFPRLQLHNHPQISTTPMYNQFSSFGETSSAMNNNYHASSNSAAAMNYPFSSGNYNGAIQGMSSMNINHSNNNIASSIESLSSMNQDLHWKLQQQRLSMLFGGGENQKDTEKPLQPILFQNLEVAKQDDRAFSVGNSRTNGGDTATEWFFGNSYGSAAATPTASGGAGHDSGSNWNGGGVHGWNDVQQQYSALP* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1299 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 336 IPR045174 GO:0003700|GO:0006355
Mtr5g1299 336 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Mtr5g1299 336 MobiDBLite consensus disorder prediction 1 41 - -
Mtr5g1299 336 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Mtr5g1299 336 MobiDBLite consensus disorder prediction 302 325 - -
Mtr5g1299 336 MobiDBLite consensus disorder prediction 89 113 - -
Mtr5g1299 336 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Mtr5g1299 336 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 26 336 - -
Mtr5g1299 336 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1299 Mtr-Chr5 13391639 13393251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1299 30 336 C2C2-Dof Transcription Factor Family AT5G65590 42.857 1.24e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr5g1299 zf-Dof 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1299 - - gmx:100780729 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1299 5 13391639 13393251 Mtr8g2093 8 30911958 30913612 PCT