Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4001 ATGCAGGAGATACAACACTCCATCGGAGGCGCCGGAGGAACCAGATTCTTCGGCGGCGGAGGTGGTGATCGGCGTCTCAGACCCAACCAAAACAACAATAACCTCAACCAAGAAGTTATGAAATGTCCTCGCTGTGACTCCATCAACACCAAATTCTGTTACTACAATAACTACAACCTCTCCCAGCCTCGTCACTTCTGCAAAAACTGCCGACGTTACTGGACTAAAGGCGGTGTTCTCCGTAACGTCCCCGTCGGTGGTGGTTGCCGGAAATCCAAACGCTCAAGCAAACCAAAAAAATCTTCCTCCTCAGATTCCACTGTTTTACCGACAACTCCACCTGAAGCGCCGGAGAATAAGTCTAACTCCCATTCCAGCAGTGAGAGTTCCAGCCTCACCGCCGCTGCGGTGACTGAAACGGTTTCAGAACCACCGCCGGAGAAGAAAATCAACAGAGGTTTTGAGAATGATTCACTGGAACAAGGAACAGGTGATTGTGGTATATTCTCAGAGATCGCAACTTTCACAAGCTTGATCACTTCCTCTAACGAGACATTGCCGTTTGGATTTGGTATCGGTAACGATAACCGTAACGGTAATGTTAACGTTAACGGTTTTAATGATGCGTCGTCGTTTCAGTGGCAAAACCAAAAGCTGATGAGCGTTACCGGCGATCAAAAACATCATGAAGAAGACGCATTGAAGTTGTTACCGGAGAATATAGGTGGTGGTGCTGGTGGAGGTGGTTCTTCTGGTTCTGGATCGTTGATGGACCATGGTATTGATTTCTCTTTGCTGCAGAGTAAAACAAGCAACGGTGGATTTGGATCGTTGGATTGGAATGGTGATGGTAGTGCTGATCATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCATGGTTACTGGAATCACACTCAATGGTCTGATCAGGATCATTCTTCTCTCTTTCATCTTCCATGA 963 0.4683 MQEIQHSIGGAGGTRFFGGGGGDRRLRPNQNNNNLNQEVMKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPKKSSSSDSTVLPTTPPEAPENKSNSHSSSESSSLTAAAVTETVSEPPPEKKINRGFENDSLEQGTGDCGIFSEIATFTSLITSSNETLPFGFGIGNDNRNGNVNVNGFNDASSFQWQNQKLMSVTGDQKHHEEDALKLLPENIGGGAGGGGSSGSGSLMDHGIDFSLLQSKTSNGGFGSLDWNGDGSADHQGLFDLPNTVDHGYWNHTQWSDQDHSSLFHLP* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4001 320 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Mtr4g4001 320 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Mtr4g4001 320 MobiDBLite consensus disorder prediction 1 36 - -
Mtr4g4001 320 MobiDBLite consensus disorder prediction 85 158 - -
Mtr4g4001 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 229 IPR045174 GO:0003700|GO:0006355
Mtr4g4001 320 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 9 229 - -
Mtr4g4001 320 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Mtr4g4001 320 MobiDBLite consensus disorder prediction 101 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4001 Mtr-Chr4 53791595 53793128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4001 23 320 C2C2-Dof Transcription Factor Family AT5G60850 41.925 3.63e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr4g4001 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4001 - - mtr:MTR_4g109980 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4001 4 53791595 53793128 Mtr4g4001 4 53791595 53793128 ECH
Mtr4g4001 4 53791595 53793128 Mtr2g2070 2 30608316 30609333 PCT