Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3970 ATGGTTAAGAAGATCTGTGGAATTGGAGCTGGATATGTAGGGGGTCCAACAATGGCTGTTATTGCCCTCAAATGTCCTTCAATTGAAGTAGCTGTGGTTGACATCTCTCACTCTCGCATATCAGCTTGGAACAGCGACAAACTCCCTATCTATGAGCCTGGCCTAGAAGAAGTTATACAACAATGTAGAGGAAAGAATCTCCTCTTCAGCACTGATATAGAAAAACATGTTTATGAAGCGGATATAATCTTTGTTAATGTCAACACACCAACAAAAACAAGTGGCCTTGGAGCTGGCAAAGCGGCGGATTTAACTTATTGGGAAAGTGCAGCGAGAATGATAGCCGATGTTTCAAGATCAAACAAAATTGTCGTTGAGAAATCAACTGTTCCAGTTAGAACAGCTGAAGTAATTGAAAAGATTCTAGTCCACAATAGCAATGGCATGGTCAAGTATCAAATTTTGTCAAATCCTGAATTTCTTTCTGAAGGAACTTCCATTCAGGATCTTCTAAATCCTGATAGGGTTCTAATTGGAGGAAATGATAAGAATCTTGGAGGTCAAGAAGCTATTCAAAAATTGAAAGCTATATATGCTAATTGGGTTCCTGAAGATAGAATCATAACTACCAATCTTTGGTCTGCTGAACTCTCTAAGTTAGCTGATAATGCTTTTTTGGCTCAAAGAATTTCTTCCATCAATGCCATGTCAGCTTTATGTGAGGCTACTGGTGCAGATGTTTCACAGGTTTCTTGTGTTTTAAGTAAAAACACCAAACTTGGTTCTAAATACTTAAATGCCAGTGTTGGTTTTGGTGGCTCTTGTTTTCAAAAAGATATACTCAACTTGGTTTATATATGTGAGAGTAATGGACTCGTTGAAGTGGCTAATTATTGGAAAGAAGTAATCAAGGTGAATGATTACCAAAAGAGTAGGTTTGTAAAAAAAGTCGTGACATCCATGTTTAACACAGTTTCAGGTAAGAAGATTGCGGTTCTAGGATTTTCCTTCAAGAAAGACACTAGTGATACAAGGAAAACTCCTGCGATCGACGTTTGCAAAGGTCTTTTGGCAGATAATGCTTGCTTGAGCATTTACGATCCGCGGGTAAGTGAAGATCAGATTCGGACAGATTTGTCTACGAATGAGATTCGTTGGGACTGTTCAACTCAGGTGAAGCCGGCGAGTTTTACTAATGTGAAGCAGGTTAGTGTTTTTGGGGATGTTTATGAGGCAACTAAAGATGCTCATGGGATATGTGTTCTTACTGAATGGGATGAGTTTAAGACAATTGATTATCAAAAAATATTTGATAGTATGGAGAAACCAGCATTTGTTTTTGATGGTAGAAATGTTTTGGATGTTGATAAGTTGAAGAAAATTGGATTTATTGTATACTCAATTGGGAAACCAATAGACCAGTGGGTGGATTGCTAG 1437 0.3807 MVKKICGIGAGYVGGPTMAVIALKCPSIEVAVVDISHSRISAWNSDKLPIYEPGLEEVIQQCRGKNLLFSTDIEKHVYEADIIFVNVNTPTKTSGLGAGKAADLTYWESAARMIADVSRSNKIVVEKSTVPVRTAEVIEKILVHNSNGMVKYQILSNPEFLSEGTSIQDLLNPDRVLIGGNDKNLGGQEAIQKLKAIYANWVPEDRIITTNLWSAELSKLADNAFLAQRISSINAMSALCEATGADVSQVSCVLSKNTKLGSKYLNASVGFGGSCFQKDILNLVYICESNGLVEVANYWKEVIKVNDYQKSRFVKKVVTSMFNTVSGKKIAVLGFSFKKDTSDTRKTPAIDVCKGLLADNACLSIYDPRVSEDQIRTDLSTNEIRWDCSTQVKPASFTNVKQVSVFGDVYEATKDAHGICVLTEWDEFKTIDYQKIFDSMEKPAFVFDGRNVLDVDKLKKIGFIVYSIGKPIDQWVDC* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3970 478 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 331 454 IPR014027 GO:0016616|GO:0051287
Mtr4g3970 478 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 213 307 IPR014026 GO:0016616|GO:0051287
Mtr4g3970 478 Gene3D - 1 211 - -
Mtr4g3970 478 SMART UDPG_MGDP_dh_C_a_2_a 331 455 IPR014027 GO:0016616|GO:0051287
Mtr4g3970 478 PIRSF UDPglc_DH_euk 1 478 IPR028356 GO:0003979
Mtr4g3970 478 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 213 312 IPR008927 -
Mtr4g3970 478 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 3 476 IPR028356 GO:0003979
Mtr4g3970 478 PIRSF UDPglc_GDPman_dh 3 470 IPR017476 GO:0016616
Mtr4g3970 478 Gene3D - 212 243 - -
Mtr4g3970 478 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 3 476 - -
Mtr4g3970 478 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 186 IPR001732 GO:0016616|GO:0051287
Mtr4g3970 478 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 4 451 IPR017476 GO:0016616
Mtr4g3970 478 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 316 466 IPR036220 -
Mtr4g3970 478 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 217 IPR036291 -
Mtr4g3970 478 Gene3D - 244 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3970 Mtr-Chr4 53454115 53457251 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g0254 7 3905412 3908477 Mtr4g3970 4 53454115 53457251 ECH
Mtr4g3970 4 53454115 53457251 Mtr4g3970 4 53454115 53457251 ECH