Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3468 ATGGGTCTTAATAATCAAGATGCTAGTAACAACTCAGGCCTTCAACTTATTCTAGGCTTAGCTCTTACTCTTACCAAACAAGACACACCACCATCCAACAACAACGTTACAAAGCCTTATTCCTCAAGTAATCATAACAACTATGAAGCTGAACCATCTTTAACGTTGGGTTTATCCACTAAGAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAATTCACCTCATCACAGCGTTGTTTCCTCTTTTTCAAGTGGGAGGGTGAAGAGAGAAAGAGATGTTAGCAGTGAATTAGAAATGGAAACAACGGAGATGGAGAGAGTTTCTTCGAGAATCAGCGATGAAGATGAAGACGGTGCCACTGCAGCTAGGAAGAAGCTTAGGCTCACCAAAGATCAATCTGCTATGCTTGAAGAAAGCTTCAAAGAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGAGAGTTAAATCTAACACCTCGACAAGTCGAGGTCTGGTTCCAGAACCGTAGAGCCAGAACAAAGCTGAAGCAAACAGAAGTGGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGAAGAGAATAGGAGGCTACAAAAGGAGGTGCAAGAATTGAAGGCACTGAAACTAGTAAAACCCTTGTATATGCCTATGCCAGCAGCTACCCTTACTATGTGCCCTTCATGTGAGAGACTAGGTGGTGGTGGTGGTGTTAATGGTGGTTCTTCAAATAAGACCAATTTCTCTAAGCCTCACTTTTACAACCCCTTCACAAATTCTTCAGCAGCATGTTGA 816 0.4142 MGLNNQDASNNSGLQLILGLALTLTKQDTPPSNNNVTKPYSSSNHNNYEAEPSLTLGLSTKSYYEEPLDFSTQTNSPHHSVVSSFSSGRVKRERDVSSELEMETTEMERVSSRISDEDEDGATAARKKLRLTKDQSAMLEESFKEHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKEVQELKALKLVKPLYMPMPAATLTMCPSCERLGGGGGVNGGSSNKTNFSKPHFYNPFTNSSAAC* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3468 271 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 10 271 - -
Mtr4g3468 271 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Mtr4g3468 271 MobiDBLite consensus disorder prediction 26 48 - -
Mtr4g3468 271 PANTHER - 10 271 - -
Mtr4g3468 271 SMART HOX_1 124 186 IPR001356 GO:0003677
Mtr4g3468 271 CDD homeodomain 126 183 IPR001356 GO:0003677
Mtr4g3468 271 Gene3D - 130 180 - -
Mtr4g3468 271 Coils Coil 188 218 - -
Mtr4g3468 271 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Mtr4g3468 271 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Mtr4g3468 271 MobiDBLite consensus disorder prediction 92 122 - -
Mtr4g3468 271 SUPERFAMILY Homeodomain-like 120 183 IPR009057 -
Mtr4g3468 271 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Mtr4g3468 271 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3468 Mtr-Chr4 48218663 48220327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3468 1 271 Homeobox Transcription Factor Family AT4G37790 60.764 2.40e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr4g3468 Homeodomain 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3468 K09338 - gmx:100807123 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0536 5 5069638 5071845 Mtr4g3468 4 48218663 48220327 PCT